{"id":"https://openalex.org/W2153653863","doi":"https://doi.org/10.1093/bioinformatics/btn216","title":"High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting","display_name":"High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting","publication_year":2008,"publication_date":"2008-05-03","ids":{"openalex":"https://openalex.org/W2153653863","doi":"https://doi.org/10.1093/bioinformatics/btn216","mag":"2153653863","pmid":"https://pubmed.ncbi.nlm.nih.gov/18453553"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1498/49053872/bioinformatics_24_13_1498.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1498/49053872/bioinformatics_24_13_1498.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079012677","display_name":"Istv\u00e1n Bogd\u00e1n","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Istv\u00e1n A. Bogd\u00e1n","raw_affiliation_strings":["1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK","institution_ids":["https://openalex.org/I146655781","https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010433020","display_name":"Jenny Rivers","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jenny Rivers","raw_affiliation_strings":["1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK","institution_ids":["https://openalex.org/I146655781","https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087705909","display_name":"Robert J. Beynon","orcid":"https://orcid.org/0000-0003-0857-495X"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert J. Beynon","raw_affiliation_strings":["1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK","institution_ids":["https://openalex.org/I146655781","https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077347224","display_name":"Daniel Coca","orcid":"https://orcid.org/0000-0003-2878-2422"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Daniel Coca","raw_affiliation_strings":["1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Automatic Control & Systems Engineering, The University of Sheffield, Mappin Street, Sheffield S1 3JD and 2Proteomics and Functional Genomics Group, Faculty of Veterinary Science, University of Liverpool, Crown Street, Liverpool L69 7ZJ, UK","institution_ids":["https://openalex.org/I146655781","https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5077347224"],"corresponding_institution_ids":["https://openalex.org/I146655781","https://openalex.org/I91136226"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.462,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.80528978,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"13","first_page":"1498","last_page":"1502"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7843135595321655},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.6422457695007324},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.592924177646637},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5747708082199097},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.5251976251602173},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.4918529987335205},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.4768986701965332},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.4717807471752167},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.4236105680465698},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.39697232842445374},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20047664642333984},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19234800338745117}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7843135595321655},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.6422457695007324},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.592924177646637},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5747708082199097},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.5251976251602173},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.4918529987335205},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.4768986701965332},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.4717807471752167},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.4236105680465698},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.39697232842445374},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20047664642333984},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19234800338745117},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003199","descriptor_name":"Computer Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D004867","descriptor_name":"Equipment Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004867","descriptor_name":"Equipment Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004867","descriptor_name":"Equipment Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004867","descriptor_name":"Equipment Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D010449","descriptor_name":"Peptide Mapping","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019544","descriptor_name":"Equipment Failure Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019544","descriptor_name":"Equipment Failure Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019544","descriptor_name":"Equipment Failure Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019544","descriptor_name":"Equipment Failure Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1498/49053872/bioinformatics_24_13_1498.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18453553","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18453553","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3133936","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3133936","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn216","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn216","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/1498/49053872/bioinformatics_24_13_1498.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1708701081","display_name":null,"funder_award_id":"BBS/B/16402","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G352488649","display_name":null,"funder_award_id":"BB/F004745/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5687695194","display_name":"FPGA supercomputing technology for high-throughput identification and quantitation in proteomics","funder_award_id":"BB/F004893/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8625652993","display_name":null,"funder_award_id":"BB/F004893/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8691589957","display_name":"FPGA supercomputing technology for high-throughput identification and quantitation in proteomics","funder_award_id":"BB/F004745/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2153653863.pdf","grobid_xml":"https://content.openalex.org/works/W2153653863.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W100825204","https://openalex.org/W1594783879","https://openalex.org/W1966118102","https://openalex.org/W1968743753","https://openalex.org/W1981593008","https://openalex.org/W1985469117","https://openalex.org/W1985560593","https://openalex.org/W2003562621","https://openalex.org/W2020699450","https://openalex.org/W2037886119","https://openalex.org/W2055063265","https://openalex.org/W2102122585","https://openalex.org/W2123376874","https://openalex.org/W2123446746","https://openalex.org/W2133098231","https://openalex.org/W2136868040","https://openalex.org/W2163680465","https://openalex.org/W2166760518","https://openalex.org/W2167679437","https://openalex.org/W2168652696","https://openalex.org/W2561675875","https://openalex.org/W6635629768","https://openalex.org/W6641702090","https://openalex.org/W6660116674","https://openalex.org/W6679609489","https://openalex.org/W6680770502","https://openalex.org/W6683745241"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W98480971","https://openalex.org/W2499279132","https://openalex.org/W4297942731","https://openalex.org/W3205838256","https://openalex.org/W2607998022","https://openalex.org/W2943610686","https://openalex.org/W229781084","https://openalex.org/W2143394857"],"abstract_inverted_index":{"MOTIVATION:":[0],"Peptide":[1],"mass":[2,54,63,134,234],"fingerprinting":[3],"(PMF)":[4],"is":[5,15,72,117],"a":[6,13,18,33,61,76,93,96,100,105,122,128,132,154,160,169,174,183,203,239,244],"method":[7],"for":[8,81],"protein":[9,14,70,84,248],"identification":[10,249],"in":[11,95,107,114,140],"which":[12,115],"fragmented":[16],"by":[17,221],"defined":[19],"cleavage":[20],"protocol":[21],"(usually":[22],"proteolysis":[23],"with":[24,195],"trypsin),":[25],"and":[26,119,232],"the":[27,47,52,66,82,112,212,223,233],"masses":[28],"of":[29,42,50,78,131,173,211],"these":[30],"products":[31],"constitute":[32],"'fingerprint'":[34],"that":[35,102,215],"can":[36,90,103,218],"be":[37,219],"searched":[38],"against":[39],"theoretical":[40],"fingerprints":[41],"all":[43],"known":[44,79],"proteins.":[45],"In":[46,65,121,164],"first":[48],"stage":[49,68],"PMF,":[51],"raw":[53,133],"spectrometric":[55],"data":[56],"are":[57],"processed":[58],"to":[59,74,153],"generate":[60],"peptide":[62],"list.":[64],"second":[67],"this":[69,165],"fingerprint":[71],"used":[73],"search":[75,177,230],"database":[77,176,229],"proteins":[80],"best":[83],"match.":[85],"Although":[86],"current":[87],"software":[88,156,199],"solutions":[89],"typically":[91],"deliver":[92],"match":[94,106],"relatively":[97],"short":[98],"time,":[99],"system":[101],"find":[104],"real":[108],"time":[109],"could":[110],"change":[111],"way":[113],"PMF":[116,247],"deployed":[118],"presented.":[120],"paper":[123],"published":[124],"earlier":[125],"we":[126,167],"presented":[127],"hardware":[129,171],"design":[130,213,224],"spectra":[135,235],"processor":[136,162,231],"that,":[137,179],"when":[138,180],"implemented":[139],"Field":[141],"Programmable":[142],"Gate":[143],"Array":[144],"(FPGA)":[145],"hardware,":[146],"achieves":[147],"almost":[148],"170-fold":[149],"speed":[150,217],"gain":[151],"relative":[152],"conventional":[155],"implementation":[157],"running":[158,181,201,237],"on":[159,182,202,225,238],"dual":[161],"server.":[163],"article":[166],"present":[168],"complementary":[170],"realization":[172],"parallel":[175],"engine":[178],"Xilinx":[184],"Virtex":[185],"2":[186],"FPGA":[187],"at":[188],"100":[189],"MHz,":[190],"delivers":[191],"1800-fold":[192],"speed-up":[193],"compared":[194],"an":[196],"equivalent":[197],"C":[198],"routine,":[200],"3.06":[204],"GHz":[205],"Xeon":[206],"workstation.":[207],"The":[208,228],"inherent":[209],"scalability":[210],"means":[214],"processing":[216],"multiplied":[220],"deploying":[222],"multiple":[226],"FPGAs.":[227],"processor,":[236],"reconfigurable":[240],"computing":[241],"platform,":[242],"provide":[243],"complete":[245],"real-time":[246],"solution.":[250]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
