{"id":"https://openalex.org/W2095596879","doi":"https://doi.org/10.1093/bioinformatics/btn181","title":"Detection of IUPAC and IUPAC-like chemical names","display_name":"Detection of IUPAC and IUPAC-like chemical names","publication_year":2008,"publication_date":"2008-06-27","ids":{"openalex":"https://openalex.org/W2095596879","doi":"https://doi.org/10.1093/bioinformatics/btn181","mag":"2095596879","pmid":"https://pubmed.ncbi.nlm.nih.gov/18586724"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn181","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i268/49053818/bioinformatics_24_13_i268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i268/49053818/bioinformatics_24_13_i268.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090743286","display_name":"Roman Klinger","orcid":"https://orcid.org/0000-0002-2014-6619"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Roman Klinger","raw_affiliation_strings":["1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001979331","display_name":"Corinna Kol\u00e1\u0159ik","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Corinna Kol\u00e1\u0159ik","raw_affiliation_strings":["1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077378114","display_name":"Juliane Fluck","orcid":"https://orcid.org/0000-0003-1379-7023"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Juliane Fluck","raw_affiliation_strings":["1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060550755","display_name":"Christoph M. Friedrich","orcid":"https://orcid.org/0000-0001-7906-0038"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph M. Friedrich","raw_affiliation_strings":["1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Fraunhofer Institute Algorithms and Scientific Computing (SCAI), Department of Bioinformatics, Schloss Birlinghoven, 53574 Sankt Augustin and 2Bonn-Aachen International Center for Information Technology (B-IT), Department of Applied Life Science Informatics, Dahlmannstrasse 2, D-53113 Bonn, Germany","institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5090743286"],"corresponding_institution_ids":["https://openalex.org/I4210098248","https://openalex.org/I4210164149"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.4917,"has_fulltext":false,"cited_by_count":139,"citation_normalized_percentile":{"value":0.95273369,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"24","issue":"13","first_page":"i268","last_page":"i276"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5674999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5674999952316284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.23000000417232513,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13297","display_name":"History and advancements in chemistry","score":0.026499999687075615,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chemical-nomenclature","display_name":"Chemical nomenclature","score":0.9953565001487732},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46539175510406494},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3797159492969513},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.18158471584320068}],"concepts":[{"id":"https://openalex.org/C125832229","wikidata":"https://www.wikidata.org/wiki/Q6503924","display_name":"Chemical nomenclature","level":2,"score":0.9953565001487732},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46539175510406494},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3797159492969513},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.18158471584320068}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004015","descriptor_name":"Dictionaries, Chemical as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004015","descriptor_name":"Dictionaries, Chemical as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004015","descriptor_name":"Dictionaries, Chemical as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btn181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn181","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i268/49053818/bioinformatics_24_13_i268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18586724","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18586724","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:fraunhofer.de:N-76016","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-76016.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:pub.librecat.org:2603465","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2603465","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Klinger R, Kolarik C, Fluck J, Hofmann-Apitius M, Friedrich CM. Detection of IUPAC and IUPAC-like Chemical Names. &lt;em&gt;Bioinformatics&lt;/em&gt;. 2008;24(13):i268-i276.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/215897","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/215897","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2718657","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2718657","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn181","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i268/49053818/bioinformatics_24_13_i268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.4699999988079071,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W24617899","https://openalex.org/W77347155","https://openalex.org/W91956791","https://openalex.org/W118065779","https://openalex.org/W182104056","https://openalex.org/W1524134026","https://openalex.org/W1560724230","https://openalex.org/W1663973292","https://openalex.org/W1883744688","https://openalex.org/W1975147762","https://openalex.org/W1995945562","https://openalex.org/W2007765066","https://openalex.org/W2008085355","https://openalex.org/W2034137005","https://openalex.org/W2049240985","https://openalex.org/W2051669046","https://openalex.org/W2061430691","https://openalex.org/W2070217628","https://openalex.org/W2118832478","https://openalex.org/W2125838338","https://openalex.org/W2136796599","https://openalex.org/W2137813581","https://openalex.org/W2141869602","https://openalex.org/W2147880316","https://openalex.org/W2148797284","https://openalex.org/W2151296343","https://openalex.org/W2152317795","https://openalex.org/W2159335058","https://openalex.org/W2162012799","https://openalex.org/W2163821187","https://openalex.org/W2169918010","https://openalex.org/W2170146596","https://openalex.org/W2523973766","https://openalex.org/W2594639291","https://openalex.org/W2756524034","https://openalex.org/W2757163186","https://openalex.org/W2949329820","https://openalex.org/W3106889297","https://openalex.org/W4300022934","https://openalex.org/W6600988039","https://openalex.org/W6603762998","https://openalex.org/W6604760373","https://openalex.org/W6631223096","https://openalex.org/W6652231536","https://openalex.org/W6652473875","https://openalex.org/W6665720283","https://openalex.org/W6677319928","https://openalex.org/W6680716847","https://openalex.org/W6682082992","https://openalex.org/W6744112343","https://openalex.org/W6744617434","https://openalex.org/W7045892546"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W2062208111","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"MOTIVATION:":[0],"Chemical":[1],"compounds":[2],"like":[3,30,56],"small":[4],"signal":[5],"molecules":[6],"or":[7,34,206],"other":[8],"biological":[9],"active":[10],"chemical":[11],"substances":[12],"are":[13,58,191],"an":[14,134,139],"important":[15],"entity":[16],"class":[17],"in":[18,49,73,115,204],"life":[19],"science":[20],"publications":[21],"and":[22,26,40,54,72,112,123,154,173],"patents.":[23],"Several":[24],"representations":[25],"nomenclatures":[27],"for":[28],"chemicals":[29],"SMILES,":[31],"InChI,":[32],"IUPAC":[33,89,111,135],"trivial":[35,52,63],"names":[36,42,53,57,64,114],"exist.":[37],"Only":[38],"SMILES":[39],"InChI":[41],"allow":[43],"a":[44,69,75,96,145,179,219,241],"direct":[45],"structure":[46],"search,":[47],"but":[48],"biomedical":[50],"texts":[51],"Iupac":[55],"used":[59],"more":[60],"frequent.":[61],"While":[62],"can":[65],"be":[66],"found":[67],"with":[68,127,138,175],"dictionary-based":[70],"approach":[71,100],"such":[74],"way":[76],"mapped":[77],"to":[78,86,107,192,226],"their":[79],"corresponding":[80],"structures,":[81],"it":[82],"is":[83],"not":[84],"possible":[85],"enumerate":[87],"all":[88],"names.":[90],"In":[91],"this":[92],"work,":[93],"we":[94],"present":[95,133],"new":[97],"machine":[98],"learning":[99],"based":[101],"on":[102,144,182],"conditional":[103,236],"random":[104,237],"fields":[105],"(CRF)":[106],"find":[108],"mentions":[109],"of":[110,142,150,161,166,196,212],"IUPAC-like":[113],"scientific":[116],"text":[117],"as":[118,120,232,234,240],"well":[119,233],"its":[121],"evaluation":[122,149,165],"the":[124,159,197,210,228,235],"conversion":[125],"rate":[126],"available":[128],"name-to-structure":[129],"tools.":[130],"RESULTS:":[131],"We":[132,208,224],"name":[136],"recognizer":[137],"F(1)":[140],"measure":[141,186],"85.6%":[143],"MEDLINE":[146,221],"corpus.":[147],"The":[148],"different":[151],"CRF":[152],"orders":[153,157],"offset":[155],"conjunction":[156],"demonstrates":[158],"importance":[160],"these":[162,183],"parameters.":[163],"An":[164],"hand-selected":[167],"patent":[168],"sections":[169],"containing":[170],"large":[171],"enumerations":[172],"terms":[174],"mixed":[176],"nomenclature":[177],"shows":[178],"good":[180],"performance":[181],"cases":[184],"(F(1)":[185],"81.5%).":[187],"Remaining":[188],"recognition":[189],"problems":[190],"detect":[193],"correct":[194],"borders":[195],"typically":[198],"long":[199],"terms,":[200],"especially":[201],"when":[202],"occurring":[203],"parentheses":[205],"enumerations.":[207],"demonstrate":[209],"scalability":[211],"our":[213],"implementation":[214],"by":[215],"providing":[216],"results":[217],"from":[218],"full":[220],"run.":[222],"AVAILABILITY:":[223],"plan":[225],"publish":[227],"corpora,":[229],"annotation":[230],"guideline":[231],"field":[238],"model":[239],"UIMA":[242],"component.":[243]},"counts_by_year":[{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":12}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
