{"id":"https://openalex.org/W2055532234","doi":"https://doi.org/10.1093/bioinformatics/btn158","title":"The ontology of biological taxa","display_name":"The ontology of biological taxa","publication_year":2008,"publication_date":"2008-06-27","ids":{"openalex":"https://openalex.org/W2055532234","doi":"https://doi.org/10.1093/bioinformatics/btn158","mag":"2055532234","pmid":"https://pubmed.ncbi.nlm.nih.gov/18586729"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn158","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i313/49054268/bioinformatics_24_13_i313.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i313/49054268/bioinformatics_24_13_i313.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101773732","display_name":"Stefan Schulz","orcid":"https://orcid.org/0000-0001-7222-3287"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE","IE"],"is_corresponding":true,"raw_author_name":"Stefan Schulz","raw_affiliation_strings":["1 Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Stefan-Meier-Str. 26, 79104 Freiburg, Germany and 2Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, University Road, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Stefan-Meier-Str. 26, 79104 Freiburg, Germany and 2Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, University Road, Galway, Ireland","institution_ids":["https://openalex.org/I2801240073","https://openalex.org/I188760350"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054197674","display_name":"Holger Stenzhorn","orcid":"https://orcid.org/0000-0001-9744-174X"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE","IE"],"is_corresponding":false,"raw_author_name":"Holger Stenzhorn","raw_affiliation_strings":["1 Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Stefan-Meier-Str. 26, 79104 Freiburg, Germany and 2Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, University Road, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Stefan-Meier-Str. 26, 79104 Freiburg, Germany and 2Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, University Road, Galway, Ireland","institution_ids":["https://openalex.org/I2801240073","https://openalex.org/I188760350"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039035898","display_name":"Martin Boeker","orcid":"https://orcid.org/0000-0003-2972-2042"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]},{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE","IE"],"is_corresponding":false,"raw_author_name":"Martin Boeker","raw_affiliation_strings":["1 Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Stefan-Meier-Str. 26, 79104 Freiburg, Germany and 2Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, University Road, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Medical Biometry and Medical Informatics, University Medical Center Freiburg, Stefan-Meier-Str. 26, 79104 Freiburg, Germany and 2Digital Enterprise Research Institute (DERI), National University of Ireland, Galway, University Road, Galway, Ireland","institution_ids":["https://openalex.org/I2801240073","https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101773732"],"corresponding_institution_ids":["https://openalex.org/I188760350","https://openalex.org/I2801240073"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.544,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.81932861,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"24","issue":"13","first_page":"i313","last_page":"i321"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9659000039100647,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9659000039100647,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.0210999995470047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.003800000064074993,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8390536308288574},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.7511058449745178},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.616446852684021},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5436174273490906},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.45684683322906494},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.44230571389198303},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3681272864341736},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3657416105270386},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.23062995076179504},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.22095254063606262},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.2121385931968689},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2108878195285797},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.15696462988853455},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1427626609802246},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.13123571872711182},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.06122443079948425},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.058814287185668945}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8390536308288574},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.7511058449745178},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.616446852684021},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5436174273490906},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.45684683322906494},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.44230571389198303},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3681272864341736},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3657416105270386},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.23062995076179504},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.22095254063606262},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.2121385931968689},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2108878195285797},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.15696462988853455},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1427626609802246},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.13123571872711182},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.06122443079948425},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.058814287185668945}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btn158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn158","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i313/49054268/bioinformatics_24_13_i313.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18586729","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18586729","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:http://www.rian.ie/162178/","is_oa":false,"landing_page_url":"http://hdl.handle.net/10379/13841","pdf_url":null,"source":{"id":"https://openalex.org/S4306400033","display_name":"Arrow@dit (Dublin Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I115570527","host_organization_name":"Dublin Institute of Technology","host_organization_lineage":["https://openalex.org/I115570527"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2718636","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2718636","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn158","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/13/i313/49054268/bioinformatics_24_13_i313.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6100000143051147}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2055532234.pdf","grobid_xml":"https://content.openalex.org/works/W2055532234.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W160404694","https://openalex.org/W564803789","https://openalex.org/W583273279","https://openalex.org/W611618653","https://openalex.org/W1482328859","https://openalex.org/W1502290627","https://openalex.org/W1540989094","https://openalex.org/W1542188499","https://openalex.org/W1542417898","https://openalex.org/W1555563750","https://openalex.org/W1575271916","https://openalex.org/W1601480441","https://openalex.org/W1698401853","https://openalex.org/W1699588189","https://openalex.org/W1940888119","https://openalex.org/W1967230168","https://openalex.org/W1977126651","https://openalex.org/W1984306711","https://openalex.org/W2008083428","https://openalex.org/W2012881519","https://openalex.org/W2048786492","https://openalex.org/W2068776400","https://openalex.org/W2091729411","https://openalex.org/W2094409931","https://openalex.org/W2096525273","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2105925956","https://openalex.org/W2113142309","https://openalex.org/W2120085642","https://openalex.org/W2122264567","https://openalex.org/W2137815920","https://openalex.org/W2139212084","https://openalex.org/W2144907661","https://openalex.org/W2155325862","https://openalex.org/W2157030269","https://openalex.org/W2160292112","https://openalex.org/W2166800785","https://openalex.org/W2489718228","https://openalex.org/W2517585216","https://openalex.org/W4205584934","https://openalex.org/W4236280034","https://openalex.org/W4239678514","https://openalex.org/W4246769241","https://openalex.org/W4247137359","https://openalex.org/W4250329948","https://openalex.org/W4285719527","https://openalex.org/W6628766360","https://openalex.org/W6632432839","https://openalex.org/W6632440936","https://openalex.org/W6636041472","https://openalex.org/W6644643250","https://openalex.org/W6673200334","https://openalex.org/W6675711575","https://openalex.org/W6675717626","https://openalex.org/W6680725892","https://openalex.org/W6683072957","https://openalex.org/W6683700694"],"related_works":["https://openalex.org/W2127299687","https://openalex.org/W1506177826","https://openalex.org/W2532736362","https://openalex.org/W2726617685","https://openalex.org/W1562796463","https://openalex.org/W3135477004","https://openalex.org/W1530162452","https://openalex.org/W2008629522","https://openalex.org/W2399880385","https://openalex.org/W2370212190"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,133],"classification":[2],"of":[3,8,22,49,56,99,159],"biological":[4,72,126,172],"entities":[5],"in":[6,16,25,125,139],"terms":[7],"species":[9,57,101],"and":[10,58,87,107,130,156,162],"taxa":[11,73,173],"is":[12,29,32,116],"an":[13,43],"important":[14],"endeavor":[15],"biology.":[17],"Although":[18],"a":[19,165],"large":[20],"amount":[21],"statements":[23],"encoded":[24],"current":[26],"biomedical":[27,78,160],"ontologies":[28,79,161],"taxon-dependent":[30],"there":[31],"no":[33],"obvious":[34],"or":[35],"standard":[36],"way":[37],"for":[38,77],"introducing":[39],"taxon":[40,119],"information":[41,120],"into":[42],"integrative":[44],"ontology":[45,143],"architecture,":[46],"supposedly":[47],"because":[48],"ongoing":[50],"controversies":[51,109],"about":[52],"the":[53,82,88,100,140,154],"ontological":[54,157],"nature":[55],"taxa.":[59],"RESULTS:":[60],"In":[61],"this":[62],"article,":[63],"we":[64],"discuss":[65],"different":[66],"approaches":[67],"on":[68],"how":[69,96],"to":[70,117,152,169],"represent":[71],"using":[74],"existing":[75,108],"standards":[76],"such":[80],"as":[81,121],"description":[83],"logic":[84],"OWL":[85],"DL":[86],"Open":[89],"Biomedical":[90],"Ontologies":[91],"Relation":[92],"Ontology.":[93],"We":[94],"demonstrate":[95],"hidden":[97],"ambiguities":[98],"concept":[102],"can":[103,110],"be":[104,111],"dealt":[105],"with":[106,171],"overcome.":[112],"A":[113],"novel":[114],"approach":[115],"envisage":[118],"qualities":[122],"that":[123],"inhere":[124],"organisms,":[127],"organism":[128],"parts":[129],"populations.":[131],"AVAILABILITY:":[132],"presented":[134],"methodology":[135],"has":[136],"been":[137],"implemented":[138],"domain":[141],"top-level":[142],"BioTop,":[144],"openly":[145],"accessible":[146],"at":[147],"http://purl.org/biotop.":[148],"BioTop":[149],"may":[150],"help":[151],"improve":[153],"logical":[155],"rigor":[158],"further":[163],"provides":[164],"clear":[166],"architectural":[167],"principle":[168],"deal":[170],"information.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
