{"id":"https://openalex.org/W4233163680","doi":"https://doi.org/10.1093/bioinformatics/btn137","title":"Mireval: a web tool for simple microRNA prediction in genome sequences","display_name":"Mireval: a web tool for simple microRNA prediction in genome sequences","publication_year":2008,"publication_date":"2008-05-03","ids":{"openalex":"https://openalex.org/W4233163680","doi":"https://doi.org/10.1093/bioinformatics/btn137","pmid":"https://pubmed.ncbi.nlm.nih.gov/18453555"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/11/1394/49046271/bioinformatics_24_11_1394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/11/1394/49046271/bioinformatics_24_11_1394.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083670919","display_name":"William Ritchie","orcid":"https://orcid.org/0000-0001-8162-1439"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"William Ritchie","raw_affiliation_strings":["1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006366461","display_name":"Fran\u00e7ois-Xavier Th\u00e9odule","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois-Xavier Th\u00e9odule","raw_affiliation_strings":["1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042025248","display_name":"Daniel Gautheret","orcid":"https://orcid.org/0000-0002-1508-8469"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Daniel Gautheret","raw_affiliation_strings":["1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France"],"affiliations":[{"raw_affiliation_string":"1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083670919"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1419,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.81804706,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"11","first_page":"1394","last_page":"1396"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6743087768554688},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6492370367050171},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5223706364631653},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5163396596908569},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.44749826192855835},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.42158252000808716},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41232842206954956},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3623672127723694},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.31935644149780273},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25735533237457275},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12028616666793823},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0895606279373169}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6743087768554688},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6492370367050171},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5223706364631653},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5163396596908569},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.44749826192855835},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.42158252000808716},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41232842206954956},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3623672127723694},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.31935644149780273},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25735533237457275},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12028616666793823},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0895606279373169},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/11/1394/49046271/bioinformatics_24_11_1394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18453555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18453555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-00297217v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00297217","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2008, 24 (11), pp.1394-6. ⟨10.1093/bioinformatics/btn137⟩","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn137","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn137","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/11/1394/49046271/bioinformatics_24_11_1394.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4233163680.pdf","grobid_xml":"https://content.openalex.org/works/W4233163680.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1543796220","https://openalex.org/W1845151788","https://openalex.org/W1920564293","https://openalex.org/W2070571588","https://openalex.org/W2099101991","https://openalex.org/W2124268899","https://openalex.org/W2161978970","https://openalex.org/W2417315358","https://openalex.org/W4206724286","https://openalex.org/W4207034695","https://openalex.org/W6713772576","https://openalex.org/W6716664757"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2101501829","https://openalex.org/W2985427592","https://openalex.org/W2003194288","https://openalex.org/W2060263731","https://openalex.org/W391093122","https://openalex.org/W4361305867","https://openalex.org/W1521239975","https://openalex.org/W2113159581"],"abstract_inverted_index":{"The":[0],"mirEval":[1],"web":[2],"server":[3],"is":[4],"available":[5],"at":[6],"http://tagc.univ-mrs.fr/mireval":[7]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}