{"id":"https://openalex.org/W2104069520","doi":"https://doi.org/10.1093/bioinformatics/btn086","title":"e-LiSe\u2014an online tool for finding needles in the \u2018(Medline) haystack\u2019","display_name":"e-LiSe\u2014an online tool for finding needles in the \u2018(Medline) haystack\u2019","publication_year":2008,"publication_date":"2008-03-05","ids":{"openalex":"https://openalex.org/W2104069520","doi":"https://doi.org/10.1093/bioinformatics/btn086","mag":"2104069520","pmid":"https://pubmed.ncbi.nlm.nih.gov/18321884"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn086","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1115/49046359/bioinformatics_24_8_1115.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1115/49046359/bioinformatics_24_8_1115.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Arek Gladki","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128244","display_name":"Institute of Biochemistry and Biophysics, Polish Academy of Sciences","ror":"https://ror.org/034tvp782","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210128244","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Arek Gladki","raw_affiliation_strings":["1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland","institution_ids":["https://openalex.org/I4210128244"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046908004","display_name":"Pawe\u0142 Siedlecki","orcid":"https://orcid.org/0000-0002-7482-1341"},"institutions":[{"id":"https://openalex.org/I4210128244","display_name":"Institute of Biochemistry and Biophysics, Polish Academy of Sciences","ror":"https://ror.org/034tvp782","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210128244","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pawel Siedlecki","raw_affiliation_strings":["1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland","institution_ids":["https://openalex.org/I4210128244"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078146179","display_name":"Szymon Kaczanowski","orcid":"https://orcid.org/0000-0002-8086-3337"},"institutions":[{"id":"https://openalex.org/I4210128244","display_name":"Institute of Biochemistry and Biophysics, Polish Academy of Sciences","ror":"https://ror.org/034tvp782","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210128244","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Szymon Kaczanowski","raw_affiliation_strings":["1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland","institution_ids":["https://openalex.org/I4210128244"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082248897","display_name":"Piotr Zielenkiewicz","orcid":"https://orcid.org/0000-0001-8151-6874"},"institutions":[{"id":"https://openalex.org/I4210128244","display_name":"Institute of Biochemistry and Biophysics, Polish Academy of Sciences","ror":"https://ror.org/034tvp782","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210128244","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Piotr Zielenkiewicz","raw_affiliation_strings":["1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Department, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, ul. Pawinskiego 5a, 02-106 and 2Plant Molecular Biology Department, Warsaw University, Warszawa, Poland","institution_ids":["https://openalex.org/I4210128244"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5082248897"],"corresponding_institution_ids":["https://openalex.org/I4210128244"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.9293,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.73960504,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"8","first_page":"1115","last_page":"1117"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11379999667406082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11379999667406082,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13748","display_name":"Advanced Statistical Modeling Techniques","score":0.07620000094175339,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.053700000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/haystack","display_name":"Haystack","score":0.9972747564315796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5706411600112915},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.4977441132068634},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36547017097473145},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3429146409034729},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17888638377189636}],"concepts":[{"id":"https://openalex.org/C13424479","wikidata":"https://www.wikidata.org/wiki/Q5687237","display_name":"Haystack","level":2,"score":0.9972747564315796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5706411600112915},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.4977441132068634},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36547017097473145},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3429146409034729},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17888638377189636},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn086","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1115/49046359/bioinformatics_24_8_1115.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18321884","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18321884","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:5b14251d-ef28-42f3-96a8-a25f0f1678ad/oai:generic.eprints.org:1130","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn086","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1115/49046359/bioinformatics_24_8_1115.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6100000143051147}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104069520.pdf","grobid_xml":"https://content.openalex.org/works/W2104069520.grobid-xml"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W1972275086","https://openalex.org/W2044514479","https://openalex.org/W2159335058"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4253878822","https://openalex.org/W3030221677","https://openalex.org/W1965563707","https://openalex.org/W4210692028","https://openalex.org/W1736550718","https://openalex.org/W2808729870","https://openalex.org/W2479343091","https://openalex.org/W2278064783","https://openalex.org/W3174858427"],"abstract_inverted_index":{"UNLABELLED:":[0],"Using":[1],"literature":[2,64],"databases":[3],"one":[4],"can":[5],"find":[6],"not":[7,80],"only":[8],"known":[9],"and":[10,49,83,118],"true":[11,40,99],"relations":[12],"between":[13,38,43],"processes":[14],"but":[15],"also":[16],"less":[17],"studied,":[18],"non-obvious":[19],"associations.":[20,106],"The":[21,34,126],"main":[22],"problem":[23,70],"with":[24],"discovering":[25],"such":[26,112],"type":[27],"of":[28,46,97],"relevant":[29],"biological":[30,47],"information":[31,77],"is":[32,55,58,71,94,128],"'selection'.":[33],"ability":[35],"to":[36],"distinguish":[37],"a":[39,89,121],"correlation":[41,54],"(e.g.":[42],"different":[44],"types":[45],"processes)":[48],"random":[50],"chance":[51],"that":[52],"this":[53,108],"statistically":[56],"significant":[57],"crucial":[59],"for":[60,76],"any":[61],"bio-medical":[62],"research,":[63],"mining":[65],"being":[66],"no":[67],"exception.":[68],"This":[69],"especially":[72],"visible":[73],"when":[74,102],"searching":[75],"which":[78],"has":[79],"been":[81],"studied":[82],"described":[84],"in":[85,120],"many":[86],"publications.":[87],"Therefore,":[88],"novel":[90],"bio-linguistic":[91],"statistical":[92,113],"method":[93],"required,":[95],"capable":[96],"'selecting'":[98],"correlations,":[100],"even":[101],"they":[103],"are":[104],"low-frequency":[105],"In":[107],"article,":[109],"we":[110],"present":[111],"approach":[114],"based":[115],"on":[116],"Z-score":[117],"implemented":[119],"web-based":[122],"application":[123],"'e-LiSe'.":[124],"AVAILABILITY:":[125],"software":[127],"available":[129],"at":[130],"http://miron.ibb.waw.pl/elise/":[131]},"counts_by_year":[{"year":2022,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
