{"id":"https://openalex.org/W2141059504","doi":"https://doi.org/10.1093/bioinformatics/btn080","title":"Reference descriptions of cellular electrophysiology models","display_name":"Reference descriptions of cellular electrophysiology models","publication_year":2008,"publication_date":"2008-03-01","ids":{"openalex":"https://openalex.org/W2141059504","doi":"https://doi.org/10.1093/bioinformatics/btn080","mag":"2141059504","pmid":"https://pubmed.ncbi.nlm.nih.gov/18310619"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn080","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1112/49045806/bioinformatics_24_8_1112.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1112/49045806/bioinformatics_24_8_1112.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086460310","display_name":"David Nickerson","orcid":"https://orcid.org/0000-0003-4667-9779"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"David P. Nickerson","raw_affiliation_strings":["Division of Bioengineering, National University of Singapore, Singapore","Division of Bioengineering, National University of Singapore, Singapore#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Bioengineering, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Division of Bioengineering, National University of Singapore, Singapore#TAB#","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088782076","display_name":"Alberto Corrias","orcid":"https://orcid.org/0000-0003-2156-713X"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Alberto Corrias","raw_affiliation_strings":["Division of Bioengineering, National University of Singapore, Singapore","Division of Bioengineering, National University of Singapore, Singapore#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Bioengineering, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Division of Bioengineering, National University of Singapore, Singapore#TAB#","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018932636","display_name":"Martin L. Buist","orcid":"https://orcid.org/0000-0003-3095-3358"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Martin L. Buist","raw_affiliation_strings":["Division of Bioengineering, National University of Singapore, Singapore","Division of Bioengineering, National University of Singapore, Singapore#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Bioengineering, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Division of Bioengineering, National University of Singapore, Singapore#TAB#","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5086460310"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":3.5773,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.9127967,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"24","issue":"8","first_page":"1112","last_page":"1114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11455","display_name":"Microbial Inactivation Methods","score":0.3301999866962433,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11455","display_name":"Microbial Inactivation Methods","score":0.3301999866962433,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10217","display_name":"Cardiac electrophysiology and arrhythmias","score":0.24609999358654022,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.12309999763965607,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.709041953086853},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5247331261634827},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5190232992172241},{"id":"https://openalex.org/keywords/electrophysiology","display_name":"Electrophysiology","score":0.5189064145088196},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.4877346456050873},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4278843402862549},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3297958970069885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2858426570892334},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.17874464392662048},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17338410019874573},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1511094570159912},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.0744236409664154},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.0741942822933197},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06327363848686218}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.709041953086853},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5247331261634827},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5190232992172241},{"id":"https://openalex.org/C185263204","wikidata":"https://www.wikidata.org/wiki/Q1154774","display_name":"Electrophysiology","level":2,"score":0.5189064145088196},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.4877346456050873},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4278843402862549},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3297958970069885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2858426570892334},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.17874464392662048},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17338410019874573},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1511094570159912},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0744236409664154},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.0741942822933197},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06327363848686218},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004594","descriptor_name":"Electrophysiology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004594","descriptor_name":"Electrophysiology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004594","descriptor_name":"Electrophysiology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007473","descriptor_name":"Ion Channels","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007473","descriptor_name":"Ion Channels","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D007473","descriptor_name":"Ion Channels","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008564","descriptor_name":"Membrane Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008564","descriptor_name":"Membrane Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008564","descriptor_name":"Membrane Potentials","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btn080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn080","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1112/49045806/bioinformatics_24_8_1112.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18310619","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18310619","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/67254","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/67254","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/7623","is_oa":false,"landing_page_url":"https://hdl.handle.net/2292/7623","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn080","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn080","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/8/1112/49045806/bioinformatics_24_8_1112.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335846","display_name":"Biomedical Research Council","ror":"https://ror.org/03xy0wx88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141059504.pdf","grobid_xml":"https://content.openalex.org/works/W2141059504.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1985940938","https://openalex.org/W1990146258","https://openalex.org/W2008451599","https://openalex.org/W2020561965","https://openalex.org/W2045919784","https://openalex.org/W2150908245"],"related_works":["https://openalex.org/W2368210935","https://openalex.org/W2594274161","https://openalex.org/W2371931285","https://openalex.org/W2005430812","https://openalex.org/W2347867117","https://openalex.org/W2792831702","https://openalex.org/W2404630065","https://openalex.org/W2058720155","https://openalex.org/W2125442762","https://openalex.org/W2323866572"],"abstract_inverted_index":{"UNLABELLED:":[0],"In":[1],"recent":[2],"years":[3],"there":[4],"has":[5,25,38,71],"been":[6,26,39,72],"much":[7,24],"development":[8],"of":[9,21,31,59,79,90,102,119],"the":[10,29,57,88],"fundamental":[11],"ideas":[12],"underlying":[13],"mathematical":[14,77],"model":[15],"curation":[16],"in":[17,28,41,53,82,110],"regard":[18],"to":[19,43,75],"models":[20,78,93,105,131],"biology.":[22],"While":[23],"achieved":[27],"realms":[30],"systems":[32],"biology":[33],"and":[34,62,115],"bioinformatics,":[35],"little":[36],"progress":[37,52],"made":[40],"relation":[42],"cellular":[44,80,103,129],"electrophysiology":[45,81,104,130],"modeling.":[46],"The":[47],"primary":[48],"reason":[49],"for":[50,66],"slow":[51],"this":[54,120],"field":[55],"is":[56],"lack":[58],"a":[60,67,96,124],"consistent":[61,125],"machine-readable":[63,85,116],"reference":[64,100],"description":[65],"given":[68],"model.":[69],"CellML":[70,92],"widely":[73],"used":[74],"describe":[76],"an":[83,111],"unambiguous,":[84,112],"format.":[86,117],"Through":[87],"use":[89],"well-annotated":[91],"we":[94],"propose":[95],"standard":[97,121],"by":[98,127],"which":[99,128],"descriptions":[101],"can":[106,132],"be":[107,133],"similarly":[108],"defined":[109],"software":[113],"independent,":[114],"Adoption":[118],"will":[122],"provide":[123],"technology":[126],"curated.":[134],"AVAILABILITY:":[135],"http://www.bioeng.nus.edu.sg/compbiolab/p2/":[136]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2025-10-10T00:00:00"}
