{"id":"https://openalex.org/W2105769812","doi":"https://doi.org/10.1093/bioinformatics/btn076","title":"BicOverlapper: A tool for bicluster visualization","display_name":"BicOverlapper: A tool for bicluster visualization","publication_year":2008,"publication_date":"2008-03-05","ids":{"openalex":"https://openalex.org/W2105769812","doi":"https://doi.org/10.1093/bioinformatics/btn076","mag":"2105769812","pmid":"https://pubmed.ncbi.nlm.nih.gov/18321885"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn076","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn076","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/9/1212/49046338/bioinformatics_24_9_1212.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/9/1212/49046338/bioinformatics_24_9_1212.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009569654","display_name":"Rodrigo Santamar\u00eda","orcid":"https://orcid.org/0000-0002-8581-8332"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Rodrigo Santamar\u00eda","raw_affiliation_strings":["Departamento de Inform\u00e1tica y Autom\u00e1tica, Pz. de Los Ca\u00eddos S/N, 37008 Salamanca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica y Autom\u00e1tica, Pz. de Los Ca\u00eddos S/N, 37008 Salamanca, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081681790","display_name":"Roberto Ther\u00f3n","orcid":"https://orcid.org/0000-0001-6739-8875"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roberto Ther\u00f3n","raw_affiliation_strings":["Departamento de Inform\u00e1tica y Autom\u00e1tica, Pz. de Los Ca\u00eddos S/N, 37008 Salamanca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica y Autom\u00e1tica, Pz. de Los Ca\u00eddos S/N, 37008 Salamanca, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090790489","display_name":"Luis Quintales","orcid":"https://orcid.org/0000-0003-3553-2237"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luis Quintales","raw_affiliation_strings":["Departamento de Inform\u00e1tica y Autom\u00e1tica, Pz. de Los Ca\u00eddos S/N, 37008 Salamanca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Inform\u00e1tica y Autom\u00e1tica, Pz. de Los Ca\u00eddos S/N, 37008 Salamanca, Spain","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5009569654"],"corresponding_institution_ids":[],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":7.8747,"has_fulltext":false,"cited_by_count":74,"citation_normalized_percentile":{"value":0.97215714,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"24","issue":"9","first_page":"1212","last_page":"1213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11439","display_name":"Video Analysis and Summarization","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7444167137145996},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5843510627746582},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4595029056072235},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3226483166217804},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2688741087913513}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7444167137145996},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5843510627746582},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4595029056072235},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3226483166217804},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2688741087913513}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003626","descriptor_name":"Data Display","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btn076","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn076","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/9/1212/49046338/bioinformatics_24_9_1212.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18321885","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18321885","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:gredos.usal.es:10366/122169","is_oa":true,"landing_page_url":"http://hdl.handle.net/10366/122169","pdf_url":null,"source":{"id":"https://openalex.org/S4377196290","display_name":"Gredos (University of Salamanca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184999862","host_organization_name":"Universidad de Salamanca","host_organization_lineage":["https://openalex.org/I184999862"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn076","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn076","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/9/1212/49046338/bioinformatics_24_9_1212.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2105769812.pdf"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1823329909","https://openalex.org/W2057682468","https://openalex.org/W2058849889","https://openalex.org/W2101108264","https://openalex.org/W2105685244","https://openalex.org/W2105883975","https://openalex.org/W2144544802","https://openalex.org/W2147246240","https://openalex.org/W2152245018","https://openalex.org/W2167482691","https://openalex.org/W6638536343"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2068608913","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3124914020","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829"],"abstract_inverted_index":{"UNLABELLED:":[0],"BicOverlapper":[1,74],"is":[2,54],"a":[3,12,57],"tool":[4],"to":[5,16,20,24],"visualize":[6],"biclusters":[7,61],"from":[8],"gene-expression":[9],"matrices":[10],"in":[11],"way":[13],"that":[14],"helps":[15],"compare":[17],"biclustering":[18,50],"methods,":[19],"unravel":[21],"trends":[22],"and":[23,28,36,39,70,76],"highlight":[25],"relevant":[26],"genes":[27,69],"conditions.":[29,71],"A":[30],"visual":[31],"approach":[32],"can":[33],"complement":[34],"biological":[35],"statistical":[37],"analysis":[38],"reduce":[40],"the":[41,47],"time":[42],"spent":[43],"by":[44],"specialists":[45],"interpreting":[46],"results":[48],"of":[49,68],"algorithms.":[51],"The":[52,73],"technique":[53],"based":[55],"on":[56],"force-directed":[58],"graph":[59],"where":[60],"are":[62,79],"represented":[63],"as":[64],"flexible":[65],"overlapped":[66],"groups":[67],"AVAILABILITY:":[72],"software":[75],"supplementary":[77],"material":[78],"available":[80],"at":[81],"http://vis.usal.es/bicoverlapper":[82]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-31T07:19:18.363097","created_date":"2016-06-24T00:00:00"}