{"id":"https://openalex.org/W2124563373","doi":"https://doi.org/10.1093/bioinformatics/btn068","title":"GOTreePlus: an interactive gene ontology browser","display_name":"GOTreePlus: an interactive gene ontology browser","publication_year":2008,"publication_date":"2008-02-21","ids":{"openalex":"https://openalex.org/W2124563373","doi":"https://doi.org/10.1093/bioinformatics/btn068","mag":"2124563373","pmid":"https://pubmed.ncbi.nlm.nih.gov/18292113"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn068","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1026/843307/btn068.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1026/843307/btn068.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065644953","display_name":"Bongshin Lee","orcid":"https://orcid.org/0000-0002-4217-627X"},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]},{"id":"https://openalex.org/I1336742384","display_name":"Children's National","ror":"https://ror.org/03wa2q724","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1336742384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bongshin Lee","raw_affiliation_strings":["1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA","institution_ids":["https://openalex.org/I1290206253","https://openalex.org/I1336742384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051366982","display_name":"Kristy J. Brown","orcid":"https://orcid.org/0000-0002-1047-4328"},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]},{"id":"https://openalex.org/I1336742384","display_name":"Children's National","ror":"https://ror.org/03wa2q724","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1336742384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kristy Brown","raw_affiliation_strings":["1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA","institution_ids":["https://openalex.org/I1290206253","https://openalex.org/I1336742384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081715473","display_name":"Yetrib Hathout","orcid":"https://orcid.org/0000-0002-7549-0476"},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]},{"id":"https://openalex.org/I1336742384","display_name":"Children's National","ror":"https://ror.org/03wa2q724","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1336742384"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yetrib Hathout","raw_affiliation_strings":["1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA","institution_ids":["https://openalex.org/I1290206253","https://openalex.org/I1336742384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012388103","display_name":"Jinwook Seo","orcid":"https://orcid.org/0000-0002-7734-822X"},"institutions":[{"id":"https://openalex.org/I1290206253","display_name":"Microsoft (United States)","ror":"https://ror.org/00d0nc645","country_code":"US","type":"company","lineage":["https://openalex.org/I1290206253"]},{"id":"https://openalex.org/I1336742384","display_name":"Children's National","ror":"https://ror.org/03wa2q724","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1336742384"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jinwook Seo","raw_affiliation_strings":["1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Microsoft Research, One Microsoft Way, Redmond, WA 98052 and 2Children's National Medical Center, 111 Michigan Ave, NW, Washington, DC 20010, USA","institution_ids":["https://openalex.org/I1290206253","https://openalex.org/I1336742384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5012388103"],"corresponding_institution_ids":["https://openalex.org/I1290206253","https://openalex.org/I1336742384"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8335,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.73018011,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"24","issue":"7","first_page":"1026","last_page":"1028"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7581999897956848,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7581999897956848,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.08699999749660492,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.05649999901652336,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.7293198704719543},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.728283166885376},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7151116728782654},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6357676386833191},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6133507490158081},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5570496320724487},{"id":"https://openalex.org/keywords/chart","display_name":"Chart","score":0.5233898758888245},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.5022275447845459},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4697178900241852},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.45367735624313354},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.42248836159706116},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3570292294025421},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24660137295722961},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2207803726196289},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.17953237891197205},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1723760962486267},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1561201810836792},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07183167338371277}],"concepts":[{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.7293198704719543},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.728283166885376},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7151116728782654},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6357676386833191},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6133507490158081},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5570496320724487},{"id":"https://openalex.org/C190812933","wikidata":"https://www.wikidata.org/wiki/Q28923","display_name":"Chart","level":2,"score":0.5233898758888245},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.5022275447845459},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4697178900241852},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.45367735624313354},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.42248836159706116},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3570292294025421},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24660137295722961},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2207803726196289},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.17953237891197205},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1723760962486267},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1561201810836792},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07183167338371277},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn068","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1026/843307/btn068.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18292113","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18292113","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn068","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1026/843307/btn068.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1858559903","display_name":null,"funder_award_id":"NIH 1P30HD40677-01","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G2061033013","display_name":null,"funder_award_id":"5R24HD050846-02","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1969918651","https://openalex.org/W2122683221","https://openalex.org/W2132174862","https://openalex.org/W2132285473","https://openalex.org/W2133140903","https://openalex.org/W2139703939","https://openalex.org/W4249273120","https://openalex.org/W6679895774"],"related_works":["https://openalex.org/W1973959357","https://openalex.org/W2360158017","https://openalex.org/W2126785046","https://openalex.org/W1982829397","https://openalex.org/W2114802749","https://openalex.org/W2140673944","https://openalex.org/W2911822841","https://openalex.org/W2258364789","https://openalex.org/W4205828568","https://openalex.org/W2124563373"],"abstract_inverted_index":{"UNLABELLED:":[0],"We":[1,60],"developed":[2],"an":[3,41],"interactive":[4,28,37],"gene":[5],"ontology":[6],"(GO)":[7],"browser":[8],"named":[9],"GOTreePlus":[10,63],"that":[11],"superimposes":[12],"annotation":[13,42],"information":[14],"over":[15],"GO":[16,25,34,47],"structures.":[17],"It":[18],"can":[19],"facilitate":[20],"the":[21,33],"identification":[22],"of":[23,30,56,72],"important":[24],"terms":[26],"through":[27],"visualization":[29],"them":[31],"in":[32],"structure.":[35],"The":[36],"pie":[38],"chart":[39],"summarizing":[40],"distribution":[43],"for":[44],"a":[45,52,65],"selected":[46],"term":[48],"provides":[49],"users":[50],"with":[51],"succinct":[53],"context-sensitive":[54],"overview":[55],"their":[57],"experimental":[58],"results.":[59],"tested":[61],"our":[62],"using":[64],"proteome":[66],"profiling":[67],"dataset":[68],"obtained":[69],"on":[70],"differentiation":[71],"retinal":[73],"pigment":[74],"epithelial":[75],"cells":[76],"where":[77],"399":[78],"proteins":[79],"were":[80],"quantified.":[81],"AVAILABILITY:":[82],"http://bioinformatics.cnmcresearch.org/GOTreePlus/.":[83]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}
