{"id":"https://openalex.org/W2126874393","doi":"https://doi.org/10.1093/bioinformatics/btn054","title":"Statistical search on the Semantic Web","display_name":"Statistical search on the Semantic Web","publication_year":2008,"publication_date":"2008-02-08","ids":{"openalex":"https://openalex.org/W2126874393","doi":"https://doi.org/10.1093/bioinformatics/btn054","mag":"2126874393","pmid":"https://pubmed.ncbi.nlm.nih.gov/18263641"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn054","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056616525","display_name":"Norio Kobayashi","orcid":"https://orcid.org/0009-0007-8718-6010"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Norio Kobayashi","raw_affiliation_strings":["Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071431815","display_name":"Tetsuro Toyoda","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Tetsuro Toyoda","raw_affiliation_strings":["Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Integrative Omics Research Team, Computational and Experimental Systems Biology Group, Genomic Sciences Center, RIKEN, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan","institution_ids":["https://openalex.org/I4210150921"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5071431815"],"corresponding_institution_ids":["https://openalex.org/I4210150921"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":1.9485,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.85904413,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"24","issue":"7","first_page":"1002","last_page":"1010"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9068999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9068999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.022099999710917473,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10286","display_name":"Information Retrieval and Search Behavior","score":0.012000000104308128,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8530315160751343},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.6645745038986206},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6577743887901306},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.6531616449356079},{"id":"https://openalex.org/keywords/semantic-search","display_name":"Semantic search","score":0.49650174379348755},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.46213215589523315},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4597587287425995},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.43387559056282043},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3581947684288025}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8530315160751343},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6645745038986206},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6577743887901306},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.6531616449356079},{"id":"https://openalex.org/C166423231","wikidata":"https://www.wikidata.org/wiki/Q1891170","display_name":"Semantic search","level":3,"score":0.49650174379348755},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.46213215589523315},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4597587287425995},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.43387559056282043},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3581947684288025},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btn054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn054","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18263641","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18263641","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Evaluation Study"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn054","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/7/1002/49049392/bioinformatics_24_7_1002.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126874393.pdf","grobid_xml":"https://content.openalex.org/works/W2126874393.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1504439773","https://openalex.org/W1854214752","https://openalex.org/W2006166559","https://openalex.org/W2024243714","https://openalex.org/W2052522161","https://openalex.org/W2054955422","https://openalex.org/W2063166169","https://openalex.org/W2094591616","https://openalex.org/W2103017472","https://openalex.org/W2106774530","https://openalex.org/W2115007282","https://openalex.org/W2118002992","https://openalex.org/W2128438887","https://openalex.org/W2132218857","https://openalex.org/W2141664150","https://openalex.org/W2152881983","https://openalex.org/W2157890829","https://openalex.org/W2159203162","https://openalex.org/W2242459625","https://openalex.org/W2274895364","https://openalex.org/W4231824804","https://openalex.org/W4239696231","https://openalex.org/W4240689716","https://openalex.org/W4285719527","https://openalex.org/W6629933387","https://openalex.org/W6639055396","https://openalex.org/W6679149167","https://openalex.org/W6679578107","https://openalex.org/W7006046120"],"related_works":["https://openalex.org/W2615202182","https://openalex.org/W4206665951","https://openalex.org/W2529794967","https://openalex.org/W2904139343","https://openalex.org/W2604011835","https://openalex.org/W3139465322","https://openalex.org/W2484233589","https://openalex.org/W2528203718","https://openalex.org/W4241483715","https://openalex.org/W2768092701"],"abstract_inverted_index":{"MOTIVATION:":[0],"Statistical":[1],"analysis":[2],"of":[3,52,88,97,122,130,165,175,178,183,211],"links":[4],"on":[5,24,214],"the":[6,37,94,128,209,215,229,233],"Semantic":[7,38,216],"Web":[8,39,217],"is":[9,41,226],"important":[10],"for":[11,36,103,115,218,232],"various":[12],"evaluation":[13,51,87,174],"purposes":[14],"such":[15],"as":[16,31,228],"quantifying":[17],"an":[18],"individual's":[19],"scientific":[20],"research":[21],"output":[22],"based":[23],"citation":[25],"links.":[26,54],"SPARQL":[27,59],"has":[28],"been":[29],"proposed":[30],"a":[32,61,119,139,143,149,162,170],"standardized":[33],"query":[34,67],"language":[35,68],"and":[40,71,85,114,154,172,188,194,238],"intuitively":[42],"understandable;":[43],"however,":[44],"it":[45],"does":[46],"not":[47],"adequately":[48],"support":[49],"statistical":[50,86,176],"semantic":[53,82],"RESULTS:":[55],"We":[56,91,145],"have":[57,92,146],"extended":[58],"to":[60,78,186],"novel":[62],"Resource":[63],"Description":[64],"Framework":[65],"(RDF)":[66],"termed":[69,152],"General":[70,153],"Rapid":[72,155],"Association":[73,156],"Study":[74,157],"Query":[75],"Language":[76],"(GRASQL)":[77],"generate":[79],"inferences":[80],"connecting":[81],"Boolean-based":[83],"deduction":[84],"RDF":[89],"resources.":[90],"verified":[93],"descriptive":[95],"capability":[96],"GRASQL":[98,101,166],"by":[99,124,142,168],"writing":[100],"queries":[102,167],"practical":[104,199],"biomedical":[105,219],"search":[106,150,230],"patterns":[107],"including":[108],"in":[109,118,138,200],"silico":[110,201],"positional":[111,202],"cloning":[112,203],"studies":[113],"ranking":[116],"researchers":[117],"specific":[120,133],"domain":[121],"expertise":[123],"introducing":[125],"k":[126],"index,":[127],"number":[129],"papers":[131],"containing":[132],"keywords":[134,193],"that":[135],"are":[136],"published":[137],"fixed":[140],"period":[141],"researcher.":[144],"also":[147],"developed":[148],"engine":[151,231],"Engine":[158],"(GRASE),":[159],"which":[160],"executes":[161],"restricted":[163],"variety":[164],"requesting":[169],"dynamic":[171],"comprehensive":[173],"significance":[177],"intersections":[179],"between":[180],"each":[181],"group":[182],"documents":[184,190],"assigned":[185],"URIs":[187],"those":[189],"matching":[191],"user-specified":[192],"omics":[195],"conditions.":[196],"By":[197],"performing":[198],"searches":[204],"with":[205],"GRASE,":[206],"we":[207],"show":[208],"relevance":[210],"our":[212],"approach":[213],"knowledge":[220],"discovery":[221],"problem":[222],"solving.":[223],"AVAILABILITY:":[224],"GRASE":[225],"used":[227],"Positional":[234],"Medline":[235],"(PosMed)":[236],"service":[237,241],"Researcher":[239],"Finder":[240],"at":[242],"http://omicspace.riken.jp/.":[243]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
