{"id":"https://openalex.org/W2146827200","doi":"https://doi.org/10.1093/bioinformatics/btn042","title":"ONTO-PERL: An API for supporting the development and analysis of bio-ontologies","display_name":"ONTO-PERL: An API for supporting the development and analysis of bio-ontologies","publication_year":2008,"publication_date":"2008-02-01","ids":{"openalex":"https://openalex.org/W2146827200","doi":"https://doi.org/10.1093/bioinformatics/btn042","mag":"2146827200","pmid":"https://pubmed.ncbi.nlm.nih.gov/18245124"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btn042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn042","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/6/885/49047819/bioinformatics_24_6_885.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/6/885/49047819/bioinformatics_24_6_885.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059590876","display_name":"Erick Antezana","orcid":"https://orcid.org/0000-0002-2497-8236"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","GB"],"is_corresponding":false,"raw_author_name":"Erick Antezana","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090216571","display_name":"Mikel Ega\u00f1a Aranguren","orcid":"https://orcid.org/0000-0001-8081-1839"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","GB"],"is_corresponding":false,"raw_author_name":"Mikel Ega\u00f1a","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012437460","display_name":"Bernard De Baets","orcid":"https://orcid.org/0000-0002-3876-620X"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","GB"],"is_corresponding":false,"raw_author_name":"Bernard De Baets","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077915624","display_name":"Martin Kuiper","orcid":"https://orcid.org/0000-0002-1171-9876"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","GB"],"is_corresponding":false,"raw_author_name":"Martin Kuiper","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080056836","display_name":"Vladimir Mironov","orcid":"https://orcid.org/0000-0002-9454-5823"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","GB"],"is_corresponding":false,"raw_author_name":"Vladimir Mironov","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, 2Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Gent, Belgium, 3University of Manchester, School of Computer Science, Oxford Road, M13 9PL Manchester, UK and 4Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Computer links 653, 9000 Gent, Belgium","institution_ids":["https://openalex.org/I28407311","https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4303,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.81069251,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"6","first_page":"885","last_page":"887"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.891700029373169,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.891700029373169,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.08879999816417694,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9783853888511658},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8563411235809326},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.8240755796432495},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5087903141975403},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5035485625267029},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.48160097002983093},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.43681958317756653},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.39510706067085266},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07052463293075562}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9783853888511658},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8563411235809326},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.8240755796432495},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5087903141975403},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5035485625267029},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.48160097002983093},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.43681958317756653},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.39510706067085266},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07052463293075562},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btn042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn042","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/6/885/49047819/bioinformatics_24_6_885.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18245124","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18245124","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:addi.ehu.eus:10810/69537","is_oa":true,"landing_page_url":"http://hdl.handle.net/10810/69537","pdf_url":"http://addi.ehu.eus/bitstream/10810/69537/1/bioinformatics_24_6_885.pdf","source":{"id":"https://openalex.org/S4306401964","display_name":"Communities in ADDI (University of the Basque Country)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169108374","host_organization_name":"University of the Basque Country","host_organization_lineage":["https://openalex.org/I169108374"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.562.6700","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.562.6700","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2008/02/01/bioinformatics.btn042.full.pdf","raw_type":"text"},{"id":"pmh:oai:archive.ugent.be:410086","is_oa":false,"landing_page_url":"http://hdl.handle.net/1854/LU-410086","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btn042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btn042","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/6/885/49047819/bioinformatics_24_6_885.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5699999928474426}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146827200.pdf","grobid_xml":"https://content.openalex.org/works/W2146827200.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1527988999","https://openalex.org/W1559519274","https://openalex.org/W1646048262","https://openalex.org/W2042377056","https://openalex.org/W2053673723","https://openalex.org/W2096704019","https://openalex.org/W2103017472","https://openalex.org/W2111903862","https://openalex.org/W2127480960","https://openalex.org/W2132784310","https://openalex.org/W2148118756","https://openalex.org/W2166574880","https://openalex.org/W6631776095"],"related_works":["https://openalex.org/W2331989206","https://openalex.org/W2008612003","https://openalex.org/W3173828731","https://openalex.org/W45658120","https://openalex.org/W4205178530","https://openalex.org/W613088223","https://openalex.org/W2739025131","https://openalex.org/W2606876474","https://openalex.org/W1974405519","https://openalex.org/W4287121746"],"abstract_inverted_index":{"MOTIVATION:":[0],"Many":[1],"biomedical":[2],"ontologies":[3,17,38],"use":[4],"OBO":[5],"or":[6],"OWL":[7],"as":[8,47,49,86,88],"knowledge":[9],"representation":[10],"language.":[11],"The":[12,82],"rapid":[13],"increase":[14],"of":[15,71,79],"such":[16,37],"calls":[18],"for":[19],"adequate":[20],"tools":[21,73],"to":[22,33],"facilitate":[23],"their":[24],"use.":[25],"In":[26],"particular,":[27],"there":[28],"is":[29],"a":[30],"pressing":[31],"need":[32],"programmatically":[34],"deal":[35],"with":[36],"in":[39],"many":[40],"applications,":[41],"including":[42],"data":[43],"integration,":[44],"text":[45],"mining,":[46],"well":[48,87],"semantic":[50],"applications":[51],"supporting":[52,74],"translational":[53],"research.":[54],"RESULTS:":[55],"We":[56],"present":[57],"an":[58],"Application":[59],"Programming":[60],"Interface":[61],"(API)":[62],"called":[63],"ONTO-PERL.":[64],"This":[65],"API":[66],"significantly":[67],"extends":[68],"the":[69,75],"repertoire":[70],"available":[72],"development":[76],"and":[77],"analysis":[78],"bio-ontologies.":[80],"AVAILABILITY:":[81],"source":[83],"code":[84,85],"sample":[89],"usage":[90],"scripts":[91],"can":[92],"be":[93],"found":[94],"at:":[95],"http://search.cpan.org/dist/ONTO-PERL/":[96]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-10T07:06:39.071514","created_date":"2025-10-10T00:00:00"}
