{"id":"https://openalex.org/W2147772097","doi":"https://doi.org/10.1093/bioinformatics/btm632","title":"Figaro: a novel statistical method for vector sequence removal","display_name":"Figaro: a novel statistical method for vector sequence removal","publication_year":2008,"publication_date":"2008-01-17","ids":{"openalex":"https://openalex.org/W2147772097","doi":"https://doi.org/10.1093/bioinformatics/btm632","mag":"2147772097","pmid":"https://pubmed.ncbi.nlm.nih.gov/18202027"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm632","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/462/49045641/bioinformatics_24_4_462.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/462/49045641/bioinformatics_24_4_462.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048216930","display_name":"James R. White","orcid":"https://orcid.org/0000-0002-7535-9179"},"institutions":[{"id":"https://openalex.org/I4210113003","display_name":"Physical Sciences (United States)","ror":"https://ror.org/021qvjc46","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113003"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Robert White","raw_affiliation_strings":["1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA","institution_ids":["https://openalex.org/I4210113003","https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000564935","display_name":"Michael Roberts","orcid":"https://orcid.org/0000-0002-1441-7363"},"institutions":[{"id":"https://openalex.org/I4210113003","display_name":"Physical Sciences (United States)","ror":"https://ror.org/021qvjc46","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113003"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Roberts","raw_affiliation_strings":["1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA","institution_ids":["https://openalex.org/I4210113003","https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022360238","display_name":"James A. Yorke","orcid":"https://orcid.org/0000-0002-9599-0136"},"institutions":[{"id":"https://openalex.org/I4210113003","display_name":"Physical Sciences (United States)","ror":"https://ror.org/021qvjc46","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113003"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James A. Yorke","raw_affiliation_strings":["1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA","institution_ids":["https://openalex.org/I4210113003","https://openalex.org/I66946132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064979917","display_name":"Mihai Pop","orcid":"https://orcid.org/0000-0001-9617-5304"},"institutions":[{"id":"https://openalex.org/I4210113003","display_name":"Physical Sciences (United States)","ror":"https://ror.org/021qvjc46","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113003"]},{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mihai Pop","raw_affiliation_strings":["1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics and Computational Biology, University of Maryland \u2013 College Park, MD 20742, 2Applied Mathematics and Scientific Computation Program, University of Maryland \u2013 College Park, MD 20742 and 3Institute for Physical Sciences and Technology, University of Maryland \u2013 College Park, MD 20742, USA","institution_ids":["https://openalex.org/I4210113003","https://openalex.org/I66946132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5064979917"],"corresponding_institution_ids":["https://openalex.org/I4210113003","https://openalex.org/I66946132"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.0795,"has_fulltext":true,"cited_by_count":40,"citation_normalized_percentile":{"value":0.8696808,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"4","first_page":"462","last_page":"467"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8942000269889832,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8942000269889832,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12134","display_name":"Insect symbiosis and bacterial influences","score":0.013399999588727951,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11403","display_name":"Invertebrate Immune Response Mechanisms","score":0.013000000268220901,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6161859631538391},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5522689819335938},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.5335372686386108},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4869421720504761},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.482864648103714},{"id":"https://openalex.org/keywords/sanger-sequencing","display_name":"Sanger sequencing","score":0.477867066860199},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.45812591910362244},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43202805519104004},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.4153566360473633},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.32968610525131226},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3053693175315857},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.24218374490737915},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21265137195587158},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11960470676422119},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10654720664024353}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6161859631538391},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5522689819335938},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.5335372686386108},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4869421720504761},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.482864648103714},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.477867066860199},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.45812591910362244},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43202805519104004},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.4153566360473633},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32968610525131226},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3053693175315857},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.24218374490737915},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21265137195587158},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11960470676422119},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10654720664024353},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005822","descriptor_name":"Genetic Vectors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm632","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/462/49045641/bioinformatics_24_4_462.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18202027","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18202027","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2725436","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2725436","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm632","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm632","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/462/49045641/bioinformatics_24_4_462.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G376875745","display_name":null,"funder_award_id":"R01-LM006845","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5545925424","display_name":null,"funder_award_id":"R01-LM006845","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7910153056","display_name":null,"funder_award_id":"R01 LM006845","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8124727942","display_name":null,"funder_award_id":"1R01HG0294501","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332504","display_name":"Uniformed Services University of the Health Sciences","ror":"https://ror.org/04r3kq386"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147772097.pdf","grobid_xml":"https://content.openalex.org/works/W2147772097.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1635391495","https://openalex.org/W1985726486","https://openalex.org/W2095685450","https://openalex.org/W2107282968","https://openalex.org/W2109336572","https://openalex.org/W2115806022","https://openalex.org/W2127230663","https://openalex.org/W2128114769","https://openalex.org/W2136651963","https://openalex.org/W2137559084","https://openalex.org/W2138270253","https://openalex.org/W2142954848","https://openalex.org/W2155419616"],"related_works":["https://openalex.org/W4224273931","https://openalex.org/W2276595233","https://openalex.org/W2949629831","https://openalex.org/W3023349464","https://openalex.org/W2752207905","https://openalex.org/W3047585652","https://openalex.org/W2897233545","https://openalex.org/W2097959219","https://openalex.org/W3155005308","https://openalex.org/W2996384775"],"abstract_inverted_index":{"MOTIVATION:":[0],"Sequences":[1],"produced":[2],"by":[3,147,192],"automated":[4],"Sanger":[5],"sequencing":[6],"machines":[7],"frequently":[8],"contain":[9],"fragments":[10],"of":[11,31,107,137,151,153,182,189],"the":[12,26,32,44,52,65,73,103,128,138,149,180,187,202,228],"cloning":[13],"vector":[14,27,33,86,129,139,142,184],"on":[15,168,186],"their":[16],"ends.":[17],"Software":[18],"tools":[19],"currently":[20],"available":[21],"for":[22,124],"identifying":[23,125],"and":[24,38,100,126,217],"removing":[25,127],"sequence":[28,132,143],"require":[29],"knowledge":[30,136],"sequence,":[34],"specific":[35],"splice":[36],"sites":[37],"any":[39],"adapter":[40],"sequences":[41,70,199],"used":[42],"in":[43,72,201,209],"experiment-information":[45],"often":[46],"omitted":[47],"from":[48,130,174,197],"public":[49],"databases.":[50],"Furthermore,":[51],"clipping":[53,87,90],"coordinates":[54],"themselves":[55],"are":[56],"missing":[57],"or":[58],"incorrectly":[59],"reported.":[60],"As":[61],"an":[62,224],"example,":[63],"within":[64],"approximately":[66,80,169],"1.24":[67],"billion":[68],"shotgun":[69,172,198],"deposited":[71,200],"NCBI":[74],"Trace":[75,203],"Archive,":[76],"as":[77,79,206],"many":[78],"735":[81],"million":[82,171],"(approximately":[83],"60%)":[84],"lack":[85],"information.":[88],"Correct":[89],"information":[91],"is":[92,144,214,221],"essential":[93],"to":[94,97],"scientists":[95],"attempting":[96],"validate,":[98],"improve":[99],"even":[101],"finish":[102],"increasingly":[104],"large":[105,210],"number":[106],"genomes":[108,196],"released":[109,222],"at":[110],"a":[111,120,207],"'draft'":[112],"quality":[113,188],"level.":[114],"RESULTS:":[115],"We":[116,159,177],"present":[117],"here":[118],"Figaro,":[119],"novel":[121],"software":[122],"tool":[123],"raw":[131],"data":[133],"without":[134],"prior":[135],"sequence.":[140],"The":[141],"automatically":[145],"inferred":[146],"analyzing":[148],"frequency":[150],"occurrence":[152],"short":[154],"oligo-nucleotides":[155],"using":[156],"Poisson":[157],"statistics.":[158],"show":[160],"that":[161],"Figaro":[162,213,220],"achieves":[163],"99.98%":[164],"sensitivity":[165],"when":[166],"tested":[167],"1.5":[170],"reads":[173],"Drosophila":[175],"pseudoobscura.":[176],"further":[178],"explore":[179],"impact":[181],"accurate":[183],"trimming":[185],"whole-genome":[190],"assemblies":[191],"re-assembling":[193],"two":[194],"bacterial":[195],"Archive.":[204],"Designed":[205],"module":[208],"computational":[211],"pipelines,":[212],"fast,":[215],"lightweight":[216],"flexible.":[218],"AVAILABILITY:":[219],"under":[223],"open-source":[225],"license":[226],"through":[227],"AMOS":[229],"package":[230],"(http://amos.sourceforge.net/Figaro).":[231]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
