{"id":"https://openalex.org/W2149191198","doi":"https://doi.org/10.1093/bioinformatics/btm623","title":"Structural systems identification of genetic regulatory networks","display_name":"Structural systems identification of genetic regulatory networks","publication_year":2008,"publication_date":"2008-01-05","ids":{"openalex":"https://openalex.org/W2149191198","doi":"https://doi.org/10.1093/bioinformatics/btm623","mag":"2149191198","pmid":"https://pubmed.ncbi.nlm.nih.gov/18175769"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm623","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm623","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/553/49045762/bioinformatics_24_4_553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/553/49045762/bioinformatics_24_4_553.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101800674","display_name":"Hao Xiong","orcid":"https://orcid.org/0000-0002-5605-066X"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hao Xiong","raw_affiliation_strings":["Department of Computer Science, Texas A&M University, College Station, TX 77843-3112"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Texas A&M University, College Station, TX 77843-3112","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011352362","display_name":"Yoonsuck Choe","orcid":"https://orcid.org/0000-0002-1454-4610"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoonsuck Choe","raw_affiliation_strings":["Department of Computer Science, Texas A&M University, College Station, TX 77843-3112"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Texas A&M University, College Station, TX 77843-3112","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101800674"],"corresponding_institution_ids":["https://openalex.org/I91045830"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3467,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.80191513,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"24","issue":"4","first_page":"553","last_page":"560"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7126784324645996},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6050980687141418},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.554405927658081},{"id":"https://openalex.org/keywords/genetic-algorithm","display_name":"Genetic algorithm","score":0.5222269296646118},{"id":"https://openalex.org/keywords/matlab","display_name":"MATLAB","score":0.4944601058959961},{"id":"https://openalex.org/keywords/genetic-network","display_name":"Genetic network","score":0.45160001516342163},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.4383881092071533},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.43727195262908936},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35128849744796753},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3289419412612915},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.31890344619750977},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14964807033538818},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11540785431861877},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09218180179595947}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7126784324645996},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6050980687141418},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.554405927658081},{"id":"https://openalex.org/C8880873","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.5222269296646118},{"id":"https://openalex.org/C2780365114","wikidata":"https://www.wikidata.org/wiki/Q169478","display_name":"MATLAB","level":2,"score":0.4944601058959961},{"id":"https://openalex.org/C2986044853","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Genetic network","level":3,"score":0.45160001516342163},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.4383881092071533},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.43727195262908936},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35128849744796753},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3289419412612915},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.31890344619750977},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14964807033538818},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11540785431861877},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09218180179595947},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004260","descriptor_name":"DNA Repair","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004260","descriptor_name":"DNA Repair","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004260","descriptor_name":"DNA Repair","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm623","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm623","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/553/49045762/bioinformatics_24_4_553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18175769","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18175769","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm623","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm623","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/553/49045762/bioinformatics_24_4_553.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149191198.pdf","grobid_xml":"https://content.openalex.org/works/W2149191198.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W83533993","https://openalex.org/W89551800","https://openalex.org/W570854018","https://openalex.org/W1534096605","https://openalex.org/W1571020026","https://openalex.org/W1626341607","https://openalex.org/W1756428283","https://openalex.org/W1820943743","https://openalex.org/W1963718895","https://openalex.org/W1964215490","https://openalex.org/W1987292430","https://openalex.org/W1996264210","https://openalex.org/W2008107402","https://openalex.org/W2011691068","https://openalex.org/W2026882865","https://openalex.org/W2046411941","https://openalex.org/W2049633694","https://openalex.org/W2050681499","https://openalex.org/W2057420075","https://openalex.org/W2079829409","https://openalex.org/W2082982706","https://openalex.org/W2088323624","https://openalex.org/W2100603120","https://openalex.org/W2110575115","https://openalex.org/W2111123076","https://openalex.org/W2118628540","https://openalex.org/W2122123241","https://openalex.org/W2126602684","https://openalex.org/W2128506325","https://openalex.org/W2134092975","https://openalex.org/W2143426522","https://openalex.org/W2146506956","https://openalex.org/W2154022964","https://openalex.org/W2159356885","https://openalex.org/W2161443380","https://openalex.org/W2165878092","https://openalex.org/W2168321118","https://openalex.org/W2482298498","https://openalex.org/W2611370172","https://openalex.org/W4248318091","https://openalex.org/W6634021788","https://openalex.org/W6641465514","https://openalex.org/W6670268304","https://openalex.org/W6671346601"],"related_works":["https://openalex.org/W2106927126","https://openalex.org/W1530164014","https://openalex.org/W1988143233","https://openalex.org/W2125300189","https://openalex.org/W1883650687","https://openalex.org/W2128506325","https://openalex.org/W1990139847","https://openalex.org/W2010984564","https://openalex.org/W2982214360","https://openalex.org/W1701136775"],"abstract_inverted_index":{"The":[0],"Matlab":[1],"code":[2],"is":[3,22],"available":[4,23],"upon":[5],"request":[6],"and":[7],"the":[8],"SOS":[9],"data":[10,21],"can":[11],"be":[12],"downloaded":[13],"from":[14,24],"http://www.weizmann.ac.il/mcb/UriAlon/Papers/SOSData/,":[15],"courtesy":[16],"of":[17],"Uri":[18],"Alon.":[19],"Zak's":[20],"his":[25],"website,":[26],"http://www.che.udel.edu/systems/people/zak.":[27]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}