{"id":"https://openalex.org/W2102255559","doi":"https://doi.org/10.1093/bioinformatics/btm615","title":"ZFIQ: a software package for zebrafish biology","display_name":"ZFIQ: a software package for zebrafish biology","publication_year":2007,"publication_date":"2007-12-18","ids":{"openalex":"https://openalex.org/W2102255559","doi":"https://doi.org/10.1093/bioinformatics/btm615","mag":"2102255559","pmid":"https://pubmed.ncbi.nlm.nih.gov/18089619"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm615","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/438/707839/btm615.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/438/707839/btm615.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100647156","display_name":"Tianming Liu","orcid":"https://orcid.org/0000-0002-8132-9048"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Tianming Liu","raw_affiliation_strings":["1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037853999","display_name":"Jingxin Nie","orcid":"https://orcid.org/0000-0002-0237-2559"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jingxin Nie","raw_affiliation_strings":["1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100438653","display_name":"Gang Li","orcid":"https://orcid.org/0000-0001-9585-1382"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Gang Li","raw_affiliation_strings":["1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344286","display_name":"Lei Guo","orcid":"https://orcid.org/0000-0003-0728-896X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Lei Guo","raw_affiliation_strings":["1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109196697","display_name":"Stephen Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Stephen T. C. Wong","raw_affiliation_strings":["1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 The Methodist Hospital Research Institute and Department of Radiology, The Methodist Hospital, 2Weill Cornell Medical College and 3School of Automation, Northwestern Polytechnic University, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5109196697"],"corresponding_institution_ids":["https://openalex.org/I17145004","https://openalex.org/I205783295"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":0.4865,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.62096824,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"24","issue":"3","first_page":"438","last_page":"439"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.8560000061988831,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.8560000061988831,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.042399998754262924,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10268","display_name":"Developmental Biology and Gene Regulation","score":0.024299999698996544,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.910967230796814},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7748636603355408},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6153057217597961},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.5774627923965454},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5499227046966553},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5094638466835022},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5034076571464539},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4729844331741333},{"id":"https://openalex.org/keywords/developmental-biology","display_name":"Developmental biology","score":0.45501577854156494},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43455690145492554},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.4293968975543976},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2753591537475586},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2207355797290802},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08538118004798889}],"concepts":[{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.910967230796814},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7748636603355408},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6153057217597961},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.5774627923965454},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5499227046966553},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5094638466835022},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5034076571464539},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4729844331741333},{"id":"https://openalex.org/C183074962","wikidata":"https://www.wikidata.org/wiki/Q213713","display_name":"Developmental biology","level":2,"score":0.45501577854156494},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43455690145492554},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.4293968975543976},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2753591537475586},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2207355797290802},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08538118004798889},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029961","descriptor_name":"Zebrafish Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D029961","descriptor_name":"Zebrafish Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D029961","descriptor_name":"Zebrafish Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm615","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/438/707839/btm615.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18089619","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18089619","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm615","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm615","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/438/707839/btm615.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306369","display_name":"Harvard NeuroDiscovery Center","ror":"https://ror.org/000cs1t14"},{"id":"https://openalex.org/F4320308380","display_name":"Yale University","ror":"https://ror.org/03v76x132"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102255559.pdf","grobid_xml":"https://content.openalex.org/works/W2102255559.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1500289019","https://openalex.org/W1979693615","https://openalex.org/W1990419694","https://openalex.org/W2026931943","https://openalex.org/W2033163523","https://openalex.org/W2033311794","https://openalex.org/W2034265209","https://openalex.org/W2066962376","https://openalex.org/W2074518046","https://openalex.org/W2111928315","https://openalex.org/W2120601853","https://openalex.org/W2131793314","https://openalex.org/W2136712321","https://openalex.org/W2144461069","https://openalex.org/W2183866846","https://openalex.org/W6657111320"],"related_works":["https://openalex.org/W1657880117","https://openalex.org/W2761746945","https://openalex.org/W1997227620","https://openalex.org/W2092868481","https://openalex.org/W2035819016","https://openalex.org/W2791121554","https://openalex.org/W2479839861","https://openalex.org/W2055418365","https://openalex.org/W3047612136","https://openalex.org/W2169736187"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"Rapid":[2],"development,":[3],"transparency":[4],"and":[5,30,47,52,75,87,93],"small":[6],"size":[7],"are":[8,126],"the":[9,43,56,70],"outstanding":[10],"features":[11],"of":[12,59,65,72,123],"zebrafish":[13,78,97],"that":[14],"make":[15],"it":[16],"as":[17,37],"an":[18],"increasingly":[19],"important":[20],"vertebrate":[21],"system":[22],"for":[23,41,49,90,103,113],"developmental":[24,91],"biology,":[25],"functional":[26],"genomics,":[27],"disease":[28,94],"modeling":[29,95],"drug":[31],"discovery.":[32],"Zebrafish":[33],"has":[34,67],"been":[35],"regarded":[36],"ideal":[38],"animal":[39],"specie":[40],"studying":[42],"relationship":[44],"between":[45],"genotype":[46],"phenotype,":[48],"pathway":[50],"analysis":[51,74,88],"systems":[53],"biology.":[54],"However,":[55],"tremendous":[57],"amount":[58],"data":[60,73,85],"generated":[61],"from":[62],"large":[63],"numbers":[64],"embryos":[66],"led":[68],"to":[69,119,128],"bottleneck":[71],"modeling.":[76],"The":[77],"image":[79],"quantitator":[80],"(ZFIQ)":[81],"software":[82,115,125],"provides":[83],"streamlined":[84],"processing":[86],"capability":[89],"biology":[92],"using":[96],"model.":[98],"Availability:":[99],"ZFIQ":[100],"is":[101,117],"available":[102],"download":[104],"at":[105],"http://www.cbi-platform.net":[106],"Contact:":[107],"STWong@tmhs.org":[108],"Supplementary":[109],"information:":[110],"Additional":[111],"documentation":[112],"this":[114,124],"package":[116],"referred":[118,127],"http://www.cbi-platform.net/document.htm.":[120],"Application":[121],"examples":[122],"http://www.cbi-platform.net/download.htm":[129]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
