{"id":"https://openalex.org/W2100549317","doi":"https://doi.org/10.1093/bioinformatics/btm611","title":"Efficient peptide\u2013MHC-I binding prediction for alleles with few known binders","display_name":"Efficient peptide\u2013MHC-I binding prediction for alleles with few known binders","publication_year":2007,"publication_date":"2007-12-14","ids":{"openalex":"https://openalex.org/W2100549317","doi":"https://doi.org/10.1093/bioinformatics/btm611","mag":"2100549317","pmid":"https://pubmed.ncbi.nlm.nih.gov/18083718"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm611","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm611","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/358/50567892/bioinformatics_24_3_358.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/358/50567892/bioinformatics_24_3_358.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059163151","display_name":"Laurent Jacob","orcid":"https://orcid.org/0000-0002-7826-2719"},"institutions":[{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Laurent Jacob","raw_affiliation_strings":["Centre for Computational Biology, \u00c9cole des Mines de Paris, 35 rue Saint Honor\u00e9, 77305 Fontainebleau Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Biology, \u00c9cole des Mines de Paris, 35 rue Saint Honor\u00e9, 77305 Fontainebleau Cedex, France","institution_ids":["https://openalex.org/I70768539"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064770739","display_name":"Jean\u2010Philippe Vert","orcid":"https://orcid.org/0000-0001-9510-8441"},"institutions":[{"id":"https://openalex.org/I70768539","display_name":"\u00c9cole Nationale Sup\u00e9rieure des Mines de Paris","ror":"https://ror.org/04y8cs423","country_code":"FR","type":"education","lineage":["https://openalex.org/I190752583","https://openalex.org/I2746051580","https://openalex.org/I70768539"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Philippe Vert","raw_affiliation_strings":["Centre for Computational Biology, \u00c9cole des Mines de Paris, 35 rue Saint Honor\u00e9, 77305 Fontainebleau Cedex, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Computational Biology, \u00c9cole des Mines de Paris, 35 rue Saint Honor\u00e9, 77305 Fontainebleau Cedex, France","institution_ids":["https://openalex.org/I70768539"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5059163151"],"corresponding_institution_ids":["https://openalex.org/I70768539"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":4.3212,"has_fulltext":true,"cited_by_count":142,"citation_normalized_percentile":{"value":0.9533306,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"24","issue":"3","first_page":"358","last_page":"366"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6904547214508057},{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6229813694953918},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5816419124603271},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5546659827232361},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5474900603294373},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5158669352531433},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.4709784984588623},{"id":"https://openalex.org/keywords/mhc-class-i","display_name":"MHC class I","score":0.43005478382110596},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.42604827880859375},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.41245919466018677},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3780760169029236},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3656904995441437},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35226601362228394},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3069884181022644},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.282432496547699},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.13532644510269165}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6904547214508057},{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6229813694953918},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5816419124603271},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5546659827232361},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5474900603294373},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5158669352531433},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.4709784984588623},{"id":"https://openalex.org/C170627219","wikidata":"https://www.wikidata.org/wiki/Q13218497","display_name":"MHC class I","level":4,"score":0.43005478382110596},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.42604827880859375},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.41245919466018677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3780760169029236},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3656904995441437},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35226601362228394},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3069884181022644},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.282432496547699},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.13532644510269165},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006183","descriptor_name":"H-2 Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006183","descriptor_name":"H-2 Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006183","descriptor_name":"H-2 Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006183","descriptor_name":"H-2 Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006183","descriptor_name":"H-2 Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006183","descriptor_name":"H-2 Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018448","descriptor_name":"Models, Immunological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btm611","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm611","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/358/50567892/bioinformatics_24_3_358.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18083718","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18083718","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.411.7234","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.411.7234","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cbio.ensmp.fr/~jvert/svn/bibli/local/Jacob2008Efficient.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00433574v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00433574","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2008, 24 (3), pp.358-66. &#x27E8;10.1093/bioinformatics/btm611&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm611","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm611","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/358/50567892/bioinformatics_24_3_358.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100549317.pdf","grobid_xml":"https://content.openalex.org/works/W2100549317.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W20362509","https://openalex.org/W1510073064","https://openalex.org/W1526741802","https://openalex.org/W1542652324","https://openalex.org/W1549641435","https://openalex.org/W1560724230","https://openalex.org/W1608064172","https://openalex.org/W1675195038","https://openalex.org/W1824426708","https://openalex.org/W1972103487","https://openalex.org/W1986280275","https://openalex.org/W1991461541","https://openalex.org/W1994048581","https://openalex.org/W2008972431","https://openalex.org/W2009791743","https://openalex.org/W2027267610","https://openalex.org/W2036363366","https://openalex.org/W2056538898","https://openalex.org/W2061526218","https://openalex.org/W2068441119","https://openalex.org/W2068580511","https://openalex.org/W2076639605","https://openalex.org/W2077480262","https://openalex.org/W2079542677","https://openalex.org/W2094706980","https://openalex.org/W2097398162","https://openalex.org/W2099485004","https://openalex.org/W2110574412","https://openalex.org/W2117057887","https://openalex.org/W2125732073","https://openalex.org/W2127910834","https://openalex.org/W2144332894","https://openalex.org/W2144752499","https://openalex.org/W2148603752","https://openalex.org/W2150383532","https://openalex.org/W2153268005","https://openalex.org/W2156827437","https://openalex.org/W2157056119","https://openalex.org/W2159767366","https://openalex.org/W2164492849","https://openalex.org/W3144619878","https://openalex.org/W4285719527","https://openalex.org/W6600825121","https://openalex.org/W6636473209","https://openalex.org/W6681414149"],"related_works":["https://openalex.org/W2381567441","https://openalex.org/W3111171798","https://openalex.org/W1840653008","https://openalex.org/W2977793531","https://openalex.org/W2023967363","https://openalex.org/W1939527068","https://openalex.org/W2070684866","https://openalex.org/W2126139339","https://openalex.org/W2168688111","https://openalex.org/W4281625971"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1,74],"silico":[2],"methods":[3,31,63],"for":[4,53,68,111],"the":[5,22,54,81,90,93,160,165,200],"prediction":[6],"of":[7,24,83,92,123,131,145,167],"antigenic":[8],"peptides":[9],"binding":[10,109,117],"to":[11,37,88,106,155],"MHC":[12,55],"class":[13],"I":[14],"molecules":[15],"play":[16,156],"an":[17],"increasingly":[18],"important":[19],"role":[20,158],"in":[21,32,143,159],"identification":[23],"T-cell":[25],"epitopes.":[26],"Statistical":[27],"and":[28,48,61,192,196],"machine":[29,101],"learning":[30],"particular":[33],"are":[34,58,194],"widely":[35],"used":[36],"score":[38],"candidate":[39],"binders":[40,47],"based":[41],"on":[42,170,185],"their":[43],"similarity":[44,132,139],"with":[45,70],"known":[46,72,154],"non-binders.":[49],"The":[50,121,181],"genes":[51],"coding":[52],"molecules,":[56],"however,":[57],"highly":[59],"polymorphic,":[60],"statistical":[62],"have":[64],"difficulties":[65],"building":[66],"models":[67,110],"alleles":[69,87,113],"few":[71],"binders.":[73],"this":[75,138,168],"context,":[76],"recent":[77],"work":[78],"has":[79],"demonstrated":[80],"utility":[82],"leveraging":[84],"information":[85,118,124],"across":[86,119],"improve":[89],"performance":[91],"prediction.":[94],"RESULTS:":[95],"We":[96,135,163],"design":[97],"a":[98,128,157,186],"support":[99],"vector":[100],"algorithm":[102],"that":[103,137],"is":[104,125,183],"able":[105],"learn":[107],"peptide-MHC-I":[108],"many":[112],"simultaneously,":[114],"by":[115,127,150],"sharing":[116,122],"alleles.":[120,134],"controlled":[126],"user-defined":[129],"measure":[130],"between":[133],"show":[136],"can":[140],"be":[141],"defined":[142],"terms":[144],"supertypes,":[146],"or":[147],"more":[148],"directly":[149],"comparing":[151],"key":[152],"residues":[153],"peptide-MHC":[161],"binding.":[162],"illustrate":[164],"potential":[166],"approach":[169],"various":[171],"benchmark":[172],"experiments":[173],"where":[174],"it":[175],"outperforms":[176],"other":[177],"state-of-the-art":[178],"methods.":[179],"AVAILABILITY:":[180],"method":[182],"implemented":[184],"web":[187],"server:":[188],"http://cbio.ensmp.fr/kiss.":[189],"All":[190],"data":[191],"codes":[193],"freely":[195],"publicly":[197],"available":[198],"from":[199],"authors.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":33},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":4}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
