{"id":"https://openalex.org/W2111375110","doi":"https://doi.org/10.1093/bioinformatics/btm599","title":"COMPARE, a multi-organism system for cross-species data comparison and transfer of information","display_name":"COMPARE, a multi-organism system for cross-species data comparison and transfer of information","publication_year":2007,"publication_date":"2007-12-01","ids":{"openalex":"https://openalex.org/W2111375110","doi":"https://doi.org/10.1093/bioinformatics/btm599","mag":"2111375110","pmid":"https://pubmed.ncbi.nlm.nih.gov/18056065"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm599","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm599","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063600106","display_name":"David Salgado","orcid":"https://orcid.org/0000-0002-5905-3591"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"David Salgado","raw_affiliation_strings":["1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210120427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045884039","display_name":"Gr\u00e9gory Gimenez","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gregory Gimenez","raw_affiliation_strings":["1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210120427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113653389","display_name":"Fran\u00e7ois Coulier","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fran\u00e7ois Coulier","raw_affiliation_strings":["1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210120427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045468870","display_name":"Christophe Marcelle","orcid":"https://orcid.org/0000-0002-9612-7609"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210120427","display_name":"Institut de Biologie du D\u00e9veloppement Marseille","ror":"https://ror.org/02me5cy06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210120427"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Christophe Marcelle","raw_affiliation_strings":["1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Developmental Biology Institute of Marseille Luminy (IBDML). CNRS UMR 6216. Universit\u00e9 de la M\u00e9diterran\u00e9e. Campus de Luminy, case 907. 13288 Marseille and 2Laboratory of Molecular Oncology, Marseille Cancer Institute, UMR599, 27 Bd. Le\u00ef Roure, 13009 Marseille, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210120427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5045468870"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210120427"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6286,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.67067871,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"24","issue":"3","first_page":"447","last_page":"449"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6001999974250793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6001999974250793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1264999955892563,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.040300000458955765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.788252592086792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.630841076374054},{"id":"https://openalex.org/keywords/information-transfer","display_name":"Information transfer","score":0.4842478930950165},{"id":"https://openalex.org/keywords/transfer","display_name":"Transfer (computing)","score":0.415813148021698},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40269649028778076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2791711091995239},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11563858389854431}],"concepts":[{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.788252592086792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.630841076374054},{"id":"https://openalex.org/C8854915","wikidata":"https://www.wikidata.org/wiki/Q4350200","display_name":"Information transfer","level":2,"score":0.4842478930950165},{"id":"https://openalex.org/C2776175482","wikidata":"https://www.wikidata.org/wiki/Q1195816","display_name":"Transfer (computing)","level":2,"score":0.415813148021698},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40269649028778076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2791711091995239},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11563858389854431},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btm599","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm599","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18056065","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18056065","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-00305995v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00305995","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2008, 24 (3), pp.447-449. &#x27E8;10.1093/bioinformatics/btm599&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-01780054v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01780054","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2008, 24 (3), pp.447 - 449. &#x27E8;10.1093/bioinformatics/btm599&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W2008856488","https://openalex.org/W2017994420","https://openalex.org/W2044514479","https://openalex.org/W2089988218","https://openalex.org/W2096525273","https://openalex.org/W2100990314","https://openalex.org/W2102370826","https://openalex.org/W2103017472","https://openalex.org/W2123375975","https://openalex.org/W2133045719","https://openalex.org/W2137084536","https://openalex.org/W2143335572","https://openalex.org/W2145477956","https://openalex.org/W2149585991","https://openalex.org/W2158092584","https://openalex.org/W2161996227","https://openalex.org/W2165674132","https://openalex.org/W2167188257","https://openalex.org/W2168048337","https://openalex.org/W4210241463","https://openalex.org/W4241827326"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W24843447","https://openalex.org/W94193318","https://openalex.org/W2073808674","https://openalex.org/W2173289516","https://openalex.org/W2014072227","https://openalex.org/W4402391642","https://openalex.org/W4282833458"],"abstract_inverted_index":{"MOTIVATION:":[0],"COMPARE":[1,19],"is":[2],"a":[3,24],"multi-organism":[4],"web-based":[5],"resource":[6],"system":[7],"designed":[8],"to":[9,23,71,78],"easily":[10],"retrieve,":[11],"correlate":[12],"and":[13,36,41,49,67],"interpret":[14],"data":[15,64],"across":[16,65],"species.":[17],"The":[18],"interface":[20],"provides":[21],"access":[22],"wide":[25],"array":[26],"of":[27,63],"information":[28,73],"including":[29],"genomic":[30],"structure,":[31],"expression":[32],"data,":[33],"annotations,":[34],"pathways":[35],"literature":[37],"links":[38],"for":[39],"human":[40],"three":[42],"widely":[43],"studied":[44,76],"animal":[45],"models":[46],"(zebrafish,":[47],"Drosophila":[48],"mouse).":[50],"A":[51],"consensus":[52],"ortholog-finding":[53],"pipeline":[54],"combining":[55],"several":[56],"ortholog":[57],"prediction":[58],"methods":[59],"allows":[60],"accurate":[61],"comparisons":[62],"species":[66],"has":[68],"been":[69],"utilized":[70],"transfer":[72],"from":[74],"well":[75],"organisms":[77],"more":[79],"poorly":[80],"annotated":[81],"ones.":[82],"AVAILABILITY:":[83],"http://compare.ibdml.univ-mrs.fr.":[84]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
