{"id":"https://openalex.org/W2106852334","doi":"https://doi.org/10.1093/bioinformatics/btm597","title":"The SGN comparative map viewer","display_name":"The SGN comparative map viewer","publication_year":2008,"publication_date":"2008-01-18","ids":{"openalex":"https://openalex.org/W2106852334","doi":"https://doi.org/10.1093/bioinformatics/btm597","mag":"2106852334","pmid":"https://pubmed.ncbi.nlm.nih.gov/18202028"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/422/50567886/bioinformatics_24_3_422.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/422/50567886/bioinformatics_24_3_422.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101523966","display_name":"Lukas A. Mueller","orcid":"https://orcid.org/0009-0007-4935-3316"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lukas A. Mueller","raw_affiliation_strings":["Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045464278","display_name":"Adri Mills","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adri A. Mills","raw_affiliation_strings":["Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054525794","display_name":"Beth Skwarecki","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Beth Skwarecki","raw_affiliation_strings":["Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053277772","display_name":"Robert Buels","orcid":"https://orcid.org/0000-0002-9605-5895"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert M. Buels","raw_affiliation_strings":["Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036847815","display_name":"Naama Menda","orcid":"https://orcid.org/0000-0002-9117-8116"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Naama Menda","raw_affiliation_strings":["Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055448814","display_name":"Steven D. Tanksley","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven D. Tanksley","raw_affiliation_strings":["Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Breeding and Genetics, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Plant Breeding & Genetics, Cornell University, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101523966"],"corresponding_institution_ids":["https://openalex.org/I205783295"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.8113,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.97491226,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"24","issue":"3","first_page":"422","last_page":"423"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13734","display_name":"Advanced Computational Techniques and Applications","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13734","display_name":"Advanced Computational Techniques and Applications","score":0.963100016117096,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10757","display_name":"Geographic Information Systems Studies","score":0.9373000264167786,"subfield":{"id":"https://openalex.org/subfields/3305","display_name":"Geography, Planning and Development"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5990488529205322},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.4589229226112366},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4201894700527191},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3462880253791809},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.33201804757118225},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12181568145751953}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5990488529205322},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.4589229226112366},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4201894700527191},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3462880253791809},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.33201804757118225},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12181568145751953}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/422/50567886/bioinformatics_24_3_422.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18202028","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18202028","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm597","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm597","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/3/422/50567886/bioinformatics_24_3_422.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5331078784","display_name":"Sequence and Annotation of the Euchromatin of Tomato.","funder_award_id":"0421634","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106852334.pdf","grobid_xml":"https://content.openalex.org/works/W2106852334.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1878048534","https://openalex.org/W1978751527","https://openalex.org/W2004505313","https://openalex.org/W2048306434","https://openalex.org/W2094283516","https://openalex.org/W2096525273","https://openalex.org/W2101153632","https://openalex.org/W2112551642","https://openalex.org/W2115292592","https://openalex.org/W2124851306","https://openalex.org/W2124879678","https://openalex.org/W2130156576","https://openalex.org/W2140300290","https://openalex.org/W4245543257"],"related_works":["https://openalex.org/W2755342338","https://openalex.org/W2058170566","https://openalex.org/W2036807459","https://openalex.org/W2775347418","https://openalex.org/W1969923398","https://openalex.org/W2166024367","https://openalex.org/W2772917594","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2079911747"],"abstract_inverted_index":{"MOTIVATION:":[0],"With":[1],"the":[2,14,26,49,74,77,93],"rapid":[3],"accumulation":[4],"of":[5,11,16,48],"genetic":[6],"data":[7,110],"for":[8,25,36,61,112],"a":[9,32,104],"multitude":[10],"different":[12,70],"species,":[13],"availability":[15],"intuitive":[17],"comparative":[18,34],"genomic":[19],"tools":[20],"becomes":[21],"an":[22],"important":[23],"requirement":[24],"research":[27],"community.":[28],"Here":[29],"we":[30],"describe":[31],"web-based":[33],"viewer":[35,78,96],"mapping":[37],"data,":[38],"including":[39],"genetic,":[40],"physical":[41],"and":[42,59,68,86,117],"cytological":[43],"maps,":[44],"that":[45,54],"is":[46,97],"part":[47],"SGN":[50,75],"website":[51],"(http://sgn.cornell.edu/)":[52],"but":[53],"can":[55],"also":[56],"be":[57],"installed":[58],"adapted":[60],"other":[62,90,113],"websites.":[63],"In":[64],"addition":[65],"to":[66,81,89,108],"viewing":[67],"comparing":[69],"maps":[71,85,91],"stored":[72],"in":[73,92,99],"database,":[76],"allows":[79],"users":[80],"upload":[82],"their":[83],"own":[84],"compare":[87],"them":[88],"system.":[94],"The":[95],"implemented":[98],"object":[100],"oriented":[101],"Perl,":[102],"with":[103],"simple":[105],"extensible":[106],"interface":[107],"write":[109],"adapters":[111],"relational":[114],"database":[115],"schemas":[116],"flat":[118],"file":[119],"formats.":[120]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
