{"id":"https://openalex.org/W2117278695","doi":"https://doi.org/10.1093/bioinformatics/btm581","title":"KEGGanim: pathway animations for high-throughput data","display_name":"KEGGanim: pathway animations for high-throughput data","publication_year":2007,"publication_date":"2007-12-01","ids":{"openalex":"https://openalex.org/W2117278695","doi":"https://doi.org/10.1093/bioinformatics/btm581","mag":"2117278695","pmid":"https://pubmed.ncbi.nlm.nih.gov/18056068"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm581","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm581","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/588/49045704/bioinformatics_24_4_588.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/588/49045704/bioinformatics_24_4_588.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059318987","display_name":"Priit Adler","orcid":"https://orcid.org/0000-0001-8276-5135"},"institutions":[{"id":"https://openalex.org/I44014704","display_name":"Estonian Biocentre","ror":"https://ror.org/04xsf1c37","country_code":"EE","type":"facility","lineage":["https://openalex.org/I44014704","https://openalex.org/I56085075"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Priit Adler","raw_affiliation_strings":["1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia","institution_ids":["https://openalex.org/I44014704","https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090505783","display_name":"J\u00fcri Reimand","orcid":"https://orcid.org/0000-0002-2299-2309"},"institutions":[{"id":"https://openalex.org/I44014704","display_name":"Estonian Biocentre","ror":"https://ror.org/04xsf1c37","country_code":"EE","type":"facility","lineage":["https://openalex.org/I44014704","https://openalex.org/I56085075"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"J\u00fcri Reimand","raw_affiliation_strings":["1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia","institution_ids":["https://openalex.org/I44014704","https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000750117","display_name":"J\u00fcrgen J\u00e4nes","orcid":"https://orcid.org/0000-0002-2540-1236"},"institutions":[{"id":"https://openalex.org/I44014704","display_name":"Estonian Biocentre","ror":"https://ror.org/04xsf1c37","country_code":"EE","type":"facility","lineage":["https://openalex.org/I44014704","https://openalex.org/I56085075"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"J\u00fcrgen J\u00e4nes","raw_affiliation_strings":["1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia","institution_ids":["https://openalex.org/I44014704","https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051838489","display_name":"Raivo Kolde","orcid":"https://orcid.org/0000-0003-2886-6298"},"institutions":[{"id":"https://openalex.org/I44014704","display_name":"Estonian Biocentre","ror":"https://ror.org/04xsf1c37","country_code":"EE","type":"facility","lineage":["https://openalex.org/I44014704","https://openalex.org/I56085075"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Raivo Kolde","raw_affiliation_strings":["1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia","institution_ids":["https://openalex.org/I44014704","https://openalex.org/I56085075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089890429","display_name":"Hedi Peterson","orcid":"https://orcid.org/0000-0001-9951-5116"},"institutions":[{"id":"https://openalex.org/I44014704","display_name":"Estonian Biocentre","ror":"https://ror.org/04xsf1c37","country_code":"EE","type":"facility","lineage":["https://openalex.org/I44014704","https://openalex.org/I56085075"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":false,"raw_author_name":"Hedi Peterson","raw_affiliation_strings":["1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia","institution_ids":["https://openalex.org/I44014704","https://openalex.org/I56085075"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011429527","display_name":"Jaak Vilo","orcid":"https://orcid.org/0000-0001-5604-4107"},"institutions":[{"id":"https://openalex.org/I44014704","display_name":"Estonian Biocentre","ror":"https://ror.org/04xsf1c37","country_code":"EE","type":"facility","lineage":["https://openalex.org/I44014704","https://openalex.org/I56085075"]},{"id":"https://openalex.org/I56085075","display_name":"University of Tartu","ror":"https://ror.org/03z77qz90","country_code":"EE","type":"education","lineage":["https://openalex.org/I56085075"]}],"countries":["EE"],"is_corresponding":true,"raw_author_name":"Jaak Vilo","raw_affiliation_strings":["1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Estonian Biocentre, Riia 23b, 2University of Tartu, Institute of Computer Science, Liivi 2 and 3QureTec Inc. \u00dclikooli 6a, Tartu, Estonia","institution_ids":["https://openalex.org/I44014704","https://openalex.org/I56085075"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5011429527"],"corresponding_institution_ids":["https://openalex.org/I44014704","https://openalex.org/I56085075"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":1.5249,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.81732191,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"24","issue":"4","first_page":"588","last_page":"590"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7002999782562256,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7002999782562256,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.0414000004529953,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.035599999129772186,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.728693425655365},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6889256238937378},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6769812107086182},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6457829475402832},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.510434091091156},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5034236311912537},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.45723044872283936},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37716758251190186},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3611515462398529},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2234325110912323},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21092480421066284},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20187655091285706},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08715945482254028},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07937389612197876},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.07753056287765503}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.728693425655365},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6889256238937378},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6769812107086182},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6457829475402832},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.510434091091156},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5034236311912537},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.45723044872283936},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37716758251190186},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3611515462398529},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2234325110912323},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21092480421066284},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20187655091285706},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08715945482254028},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07937389612197876},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.07753056287765503},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020257","descriptor_name":"Ventricular Remodeling","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020257","descriptor_name":"Ventricular Remodeling","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020257","descriptor_name":"Ventricular Remodeling","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm581","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm581","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/588/49045704/bioinformatics_24_4_588.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18056068","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18056068","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm581","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm581","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/4/588/49045704/bioinformatics_24_4_588.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"},{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321018","display_name":"Eesti Teadusfondi","ror":"https://ror.org/00jjeja18"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117278695.pdf","grobid_xml":"https://content.openalex.org/works/W2117278695.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1970156673","https://openalex.org/W2019240775","https://openalex.org/W2021239799","https://openalex.org/W2046872827","https://openalex.org/W2061425021","https://openalex.org/W2087684630","https://openalex.org/W2090969569","https://openalex.org/W2096863518","https://openalex.org/W2103453943","https://openalex.org/W2106680700","https://openalex.org/W2115789025","https://openalex.org/W2124954099","https://openalex.org/W2129010206","https://openalex.org/W2132992030","https://openalex.org/W2133036743","https://openalex.org/W2143129697","https://openalex.org/W2154362705","https://openalex.org/W2165674132"],"related_works":["https://openalex.org/W2953976309","https://openalex.org/W2327281093","https://openalex.org/W2525150146","https://openalex.org/W2245166612","https://openalex.org/W2373264576","https://openalex.org/W2066632517","https://openalex.org/W3159607254","https://openalex.org/W2165546554","https://openalex.org/W2406190765","https://openalex.org/W1555495800"],"abstract_inverted_index":{"MOTIVATION:":[0],"Gene":[1],"expression":[2],"analysis":[3],"with":[4,65,155,163],"microarrays":[5],"has":[6],"become":[7],"one":[8],"of":[9,36,69,92,141,167],"the":[10,34,60,66,124,135],"most":[11],"widely":[12],"used":[13,154],"high-throughput":[14,100],"methods":[15,55],"for":[16,80,145,160,184],"gathering":[17],"genome-wide":[18],"functional":[19],"data.":[20,71,101],"Emerging":[21],"-omics":[22],"fields":[23],"such":[24],"as":[25],"proteomics":[26],"and":[27,51,90,110,122,130,148,176,179],"interactomics":[28],"introduce":[29],"new":[30],"information":[31],"sources.":[32],"With":[33],"rise":[35],"systems":[37],"biology,":[38],"researchers":[39],"need":[40],"to":[41,58,107,126],"concentrate":[42],"on":[43],"entire":[44],"complex":[45],"pathways":[46,64,94],"that":[47,133],"guide":[48],"individual":[49],"genes":[50,132,147],"related":[52],"processes.":[53],"Bioinformatics":[54],"are":[56,104,182],"needed":[57],"link":[59],"existing":[61],"knowledge":[62],"about":[63],"growing":[67],"amounts":[68],"experimental":[70,82,108,113,149],"RESULTS:":[72],"We":[73],"present":[74],"KEGGanim,":[75],"a":[76,164],"novel":[77],"web-based":[78],"tool":[79],"visualizing":[81],"data":[83,159,170],"in":[84],"biological":[85],"pathways.":[86],"KEGGanim":[87,115,142,151],"produces":[88],"animations":[89],"images":[91],"KEGG":[93],"using":[95],"public":[96,156,168],"or":[97,157],"user":[98,125,139],"uploaded":[99],"Pathway":[102],"members":[103],"coloured":[105],"according":[106],"measurements,":[109],"animated":[111],"over":[112,120],"conditions.":[114,150],"visualization":[116,185],"highlights":[117],"dynamic":[118],"changes":[119],"conditions":[121],"allows":[123],"observe":[127],"important":[128],"modules":[129],"key":[131],"influence":[134],"pathway.":[136],"The":[137],"simple":[138],"interface":[140],"provides":[143],"options":[144],"filtering":[146],"may":[152],"be":[153],"private":[158],"14":[161],"organisms":[162],"large":[165],"collection":[166],"microarray":[169,180],"readily":[171],"available.":[172],"Most":[173],"common":[174],"gene":[175],"protein":[177],"identifiers":[178],"probesets":[181],"accepted":[183],"input.":[186],"AVAILABILITY:":[187],"http://biit.cs.ut.ee/KEGGanim/.":[188]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}