{"id":"https://openalex.org/W2133341464","doi":"https://doi.org/10.1093/bioinformatics/btm571","title":"NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks","display_name":"NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks","publication_year":2007,"publication_date":"2007-11-22","ids":{"openalex":"https://openalex.org/W2133341464","doi":"https://doi.org/10.1093/bioinformatics/btm571","mag":"2133341464","pmid":"https://pubmed.ncbi.nlm.nih.gov/18033793"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/293/16883379/btm571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/293/16883379/btm571.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020089442","display_name":"S\u00ebma Kachalo","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sema Kachalo","raw_affiliation_strings":["1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I130769515","https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020238644","display_name":"Ranran Zhang","orcid":"https://orcid.org/0000-0001-5698-1950"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ranran Zhang","raw_affiliation_strings":["1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I130769515","https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068753451","display_name":"Eduardo D. Sontag","orcid":"https://orcid.org/0000-0001-8020-5783"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eduardo Sontag","raw_affiliation_strings":["1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I130769515","https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012905268","display_name":"R\u00e9ka Albert","orcid":"https://orcid.org/0000-0002-9485-0828"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R\u00e9ka Albert","raw_affiliation_strings":["1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I130769515","https://openalex.org/I39422238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061957076","display_name":"Bhaskar DasGupta","orcid":"https://orcid.org/0000-0001-5614-5477"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bhaskar DasGupta","raw_affiliation_strings":["1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, 2Penn State Cancer Institute and Integrative Biosciences Graduate Program, Pennsylvania State University, Hershey, PA 17033, 3Department of Mathematics, Rutgers University, New Brunswick, NJ 08903, 4Departments of Physics and Biology, Pennsylvania State University, University Park, PA 16802 and 5Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I130769515","https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5061957076"],"corresponding_institution_ids":["https://openalex.org/I102322142","https://openalex.org/I130769515","https://openalex.org/I39422238"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.1315,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.76646642,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"2","first_page":"293","last_page":"295"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.3215000033378601,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.3215000033378601,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.120899997651577,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10950","display_name":"Acute Lymphoblastic Leukemia research","score":0.05640000104904175,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6713771224021912},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6696353554725647},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6021102666854858},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5945213437080383},{"id":"https://openalex.org/keywords/transduction","display_name":"Transduction (biophysics)","score":0.5638306736946106},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.49319928884506226},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.48161667585372925},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3315203785896301},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27542179822921753},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20595264434814453},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12763461470603943},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08790761232376099}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6713771224021912},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6696353554725647},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6021102666854858},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5945213437080383},{"id":"https://openalex.org/C15152581","wikidata":"https://www.wikidata.org/wiki/Q7833966","display_name":"Transduction (biophysics)","level":2,"score":0.5638306736946106},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.49319928884506226},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.48161667585372925},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3315203785896301},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27542179822921753},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20595264434814453},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12763461470603943},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08790761232376099},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btm571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/293/16883379/btm571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18033793","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18033793","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.62.1886","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.62.1886","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"http://www.cs.uic.edu/~dasgupta/resume/publ/papers/version-6.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.604.6228","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.604.6228","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2007/11/22/bioinformatics.btm571.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/293/16883379/btm571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1013049109","display_name":"Collaborative Research: SEI: Computational Methods for Kinship Reconstruction","funder_award_id":"0612044","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5033654181","display_name":"CAREER: Graph Theoretical Inference and Predictive Dynamic Modeling of Signal Transduction Networks","funder_award_id":"0643529","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6087634221","display_name":"CAREER:  Efficient Algorithms for Computational Problems in Bioinformatics Via Combinatorial and Geometric Techniques","funder_award_id":"0346973","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7480098872","display_name":"Arabidopsis 2010:  Towards a Comprehensive Arabidopsis Protein Interactome Map: Systems Biology of the Membrane Proteins and Signalosome","funder_award_id":"0618402","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8643431141","display_name":"Bioinformatics Tools Enabling Large-Scale DNA Barcoding","funder_award_id":"0543365","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8887599537","display_name":"ITR: Special Focus on Computer Science and Epidemiology","funder_award_id":"0205116","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2133341464.pdf","grobid_xml":"https://content.openalex.org/works/W2133341464.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1480061065","https://openalex.org/W2014112938","https://openalex.org/W2014566660","https://openalex.org/W2919912262"],"related_works":["https://openalex.org/W4389670110","https://openalex.org/W2187546663","https://openalex.org/W2429057255","https://openalex.org/W148745890","https://openalex.org/W2611942503","https://openalex.org/W2899790217","https://openalex.org/W1576092969","https://openalex.org/W4315621326","https://openalex.org/W2598865957","https://openalex.org/W2524154428"],"abstract_inverted_index":{"UNLABELLED:":[0],"We":[1,47],"present":[2],"a":[3,59,73],"software":[4,54],"for":[5],"combined":[6],"synthesis,":[7],"inference":[8],"and":[9,31,65,71],"simplification":[10],"of":[11,18,52],"signal":[12,62],"transduction":[13,63],"networks.":[14],"The":[15],"main":[16],"idea":[17],"our":[19,53],"method":[20],"lies":[21],"in":[22,81],"representing":[23],"observed":[24],"indirect":[25],"causal":[26],"relationships":[27],"as":[28],"network":[29,64,75],"paths":[30],"using":[32,67],"techniques":[33],"from":[34,91],"combinatorial":[35],"optimization":[36],"to":[37,58,69,77],"find":[38],"the":[39,49],"sparsest":[40],"graph":[41],"consistent":[42],"with":[43],"all":[44],"experimental":[45],"observations.":[46],"illustrate":[48],"biological":[50],"usability":[51],"by":[55,66],"applying":[56],"it":[57,68],"previously":[60],"published":[61],"synthesize":[70],"simplify":[72],"novel":[74],"corresponding":[76],"activation-induced":[78],"cell":[79],"death":[80],"large":[82],"granular":[83],"lymphocyte":[84],"leukemia.":[85],"AVAILABILITY:":[86],"NET-SYNTHESIS":[87],"is":[88],"freely":[89],"downloadable":[90],"http://www.cs.uic.edu/~dasgupta/network-synthesis/":[92]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":7}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
