{"id":"https://openalex.org/W2097989379","doi":"https://doi.org/10.1093/bioinformatics/btm519","title":"NPIDB: a Database of Nucleic Acids\u2013Protein Interactions","display_name":"NPIDB: a Database of Nucleic Acids\u2013Protein Interactions","publication_year":2007,"publication_date":"2007-10-31","ids":{"openalex":"https://openalex.org/W2097989379","doi":"https://doi.org/10.1093/bioinformatics/btm519","mag":"2097989379","pmid":"https://pubmed.ncbi.nlm.nih.gov/17977883"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm519","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm519","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076136987","display_name":"Sergey Spirin","orcid":"https://orcid.org/0000-0002-8041-1808"},"institutions":[{"id":"https://openalex.org/I4210099524","display_name":"Gamalei Institute of Epidemiology and Microbiology","ror":"https://ror.org/01616eq90","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210099524"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Sergei Spirin","raw_affiliation_strings":["1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia","institution_ids":["https://openalex.org/I4210099524","https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111659190","display_name":"\u041c. \u0418. \u0422\u0438\u0442\u043e\u0432","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099524","display_name":"Gamalei Institute of Epidemiology and Microbiology","ror":"https://ror.org/01616eq90","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210099524"]},{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mikhail Titov","raw_affiliation_strings":["1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia","institution_ids":["https://openalex.org/I4210099524","https://openalex.org/I19880235"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019487567","display_name":"A. S. Karyagina","orcid":"https://orcid.org/0000-0002-2580-3489"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I4210099524","display_name":"Gamalei Institute of Epidemiology and Microbiology","ror":"https://ror.org/01616eq90","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210099524"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Anna Karyagina","raw_affiliation_strings":["1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia","institution_ids":["https://openalex.org/I4210099524","https://openalex.org/I19880235"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056758947","display_name":"Andrei V. Alexeevski","orcid":"https://orcid.org/0000-0001-7939-9939"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]},{"id":"https://openalex.org/I4210099524","display_name":"Gamalei Institute of Epidemiology and Microbiology","ror":"https://ror.org/01616eq90","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210099524"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Andrei Alexeevski","raw_affiliation_strings":["1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia"],"affiliations":[{"raw_affiliation_string":"1 A.N.Belozersky Institute of Physical and Chemical Biology of Moscow State University, Moscow, Russia, 2Institute of Agricultural Biotechnology and 3Gamaleya Institute of Epidemiology and Microbiology, Moscow, Russia","institution_ids":["https://openalex.org/I4210099524","https://openalex.org/I19880235"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5076136987"],"corresponding_institution_ids":["https://openalex.org/I19880235","https://openalex.org/I4210099524"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4398,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.80774051,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"23","issue":"23","first_page":"3247","last_page":"3248"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6500999927520752,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6500999927520752,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.578499972820282,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.5701000094413757,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.9010491371154785},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.7405542135238647},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5882697701454163},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5244060754776001},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4581103026866913},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37561678886413574},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3308488130569458},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3251778781414032},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2900962829589844},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25242435932159424},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.22552037239074707}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.9010491371154785},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.7405542135238647},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5882697701454163},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5244060754776001},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4581103026866913},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37561678886413574},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3308488130569458},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3251778781414032},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2900962829589844},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25242435932159424},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.22552037239074707}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm519","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm519","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17977883","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17977883","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W39527118","https://openalex.org/W1965575342","https://openalex.org/W2137799984","https://openalex.org/W2412727441","https://openalex.org/W6601628451"],"related_works":["https://openalex.org/W3126783617","https://openalex.org/W2090630809","https://openalex.org/W2088162897","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W4353055924","https://openalex.org/W2806488847","https://openalex.org/W1594080560","https://openalex.org/W2338762894","https://openalex.org/W2491049015"],"abstract_inverted_index":{"http://monkey.belozersky.msu.ru/NPIDB/":[0]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
