{"id":"https://openalex.org/W2042259310","doi":"https://doi.org/10.1093/bioinformatics/btm494","title":"QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations","display_name":"QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations","publication_year":2008,"publication_date":"2008-01-17","ids":{"openalex":"https://openalex.org/W2042259310","doi":"https://doi.org/10.1093/bioinformatics/btm494","mag":"2042259310","pmid":"https://pubmed.ncbi.nlm.nih.gov/18202029"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/721/49052292/bioinformatics_24_5_721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/721/49052292/bioinformatics_24_5_721.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100604690","display_name":"Jian Yang","orcid":"https://orcid.org/0000-0003-2001-2474"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Yang","raw_affiliation_strings":["1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010426461","display_name":"Chengcheng Hu","orcid":"https://orcid.org/0000-0001-8525-0356"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengcheng Hu","raw_affiliation_strings":["1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066864898","display_name":"Han Hu","orcid":"https://orcid.org/0000-0001-9317-6133"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Hu","raw_affiliation_strings":["1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075927524","display_name":"Rongdong Yu","orcid":"https://orcid.org/0009-0000-7100-8307"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongdong Yu","raw_affiliation_strings":["1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108561039","display_name":"Zhen Xia","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Xia","raw_affiliation_strings":["1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067118299","display_name":"Xiuzi Ye","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiuzi Ye","raw_affiliation_strings":["1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101574328","display_name":"Jun Zhu","orcid":"https://orcid.org/0000-0002-9427-4517"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jun Zhu","raw_affiliation_strings":["1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Bioinformatics, Zhejiang University, Hangzhou, China, 310029 and 2Computer Graphics and Imaging Laboratory, Zhejiang University, Hangzhou, China, 310027","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5101574328"],"corresponding_institution_ids":["https://openalex.org/I76130692"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":8.85,"has_fulltext":true,"cited_by_count":416,"citation_normalized_percentile":{"value":0.98060251,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"24","issue":"5","first_page":"721","last_page":"723"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quantitative-trait-locus","display_name":"Quantitative trait locus","score":0.7438772916793823},{"id":"https://openalex.org/keywords/unix","display_name":"Unix","score":0.7329918146133423},{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.7219409942626953},{"id":"https://openalex.org/keywords/genetic-architecture","display_name":"Genetic architecture","score":0.6693965196609497},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5816091895103455},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5640424489974976},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.538804292678833},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4949011206626892},{"id":"https://openalex.org/keywords/inbred-strain","display_name":"Inbred strain","score":0.46890297532081604},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3251749873161316},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.270088255405426},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17022815346717834},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07411620020866394}],"concepts":[{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.7438772916793823},{"id":"https://openalex.org/C112968700","wikidata":"https://www.wikidata.org/wiki/Q11368","display_name":"Unix","level":3,"score":0.7329918146133423},{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.7219409942626953},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.6693965196609497},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5816091895103455},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5640424489974976},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.538804292678833},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4949011206626892},{"id":"https://openalex.org/C76725341","wikidata":"https://www.wikidata.org/wiki/Q1893126","display_name":"Inbred strain","level":3,"score":0.46890297532081604},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3251749873161316},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.270088255405426},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17022815346717834},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07411620020866394}],"mesh":[{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011995","descriptor_name":"Recombination, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040641","descriptor_name":"Quantitative Trait Loci","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/721/49052292/bioinformatics_24_5_721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:18202029","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/18202029","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:307755","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/5/721/49052292/bioinformatics_24_5_721.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4353437723","display_name":null,"funder_award_id":"2006AA10A102","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5030127649","display_name":null,"funder_award_id":"2006CB101700","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2042259310.pdf","grobid_xml":"https://content.openalex.org/works/W2042259310.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1841573652","https://openalex.org/W1864995317","https://openalex.org/W1914121885","https://openalex.org/W2012975927","https://openalex.org/W2034608799","https://openalex.org/W2061744749","https://openalex.org/W2066967522","https://openalex.org/W2108908271","https://openalex.org/W2116053845","https://openalex.org/W2140573444","https://openalex.org/W2163285329","https://openalex.org/W2612775479","https://openalex.org/W4206653471"],"related_works":["https://openalex.org/W1988072872","https://openalex.org/W3150638776","https://openalex.org/W2402496592","https://openalex.org/W2113244577","https://openalex.org/W4298004265","https://openalex.org/W1996840382","https://openalex.org/W2162555644","https://openalex.org/W4213127452","https://openalex.org/W2416919291","https://openalex.org/W2140140747"],"abstract_inverted_index":{"SUMMARY:":[0],"QTLNetwork":[1,75],"is":[2,44],"a":[3,21,79],"software":[4],"package":[5],"for":[6,16],"mapping":[7],"and":[8,39,55,68,102],"visualizing":[9],"the":[10,84,88],"genetic":[11],"architecture":[12],"underlying":[13],"complex":[14],"traits":[15],"experimental":[17],"populations":[18,61],"derived":[19],"from":[20,49,62],"cross":[22],"between":[23],"two":[24],"inbred":[25,53],"lines.":[26],"It":[27],"can":[28],"simultaneously":[29],"map":[30],"quantitative":[31],"trait":[32],"loci":[33],"(QTL)":[34],"with":[35,78],"individual":[36],"effects,":[37],"epistasis":[38],"QTL-environment":[40],"interaction.":[41],"Currently,":[42],"it":[43],"able":[45],"to":[46,90],"handle":[47],"data":[48],"F(2),":[50],"backcross,":[51],"recombinant":[52],"lines":[54],"double-haploid":[56],"populations,":[57],"as":[58,60,99],"well":[59],"specific":[63],"mating":[64],"designs":[65],"(immortalized":[66],"F(2)":[67],"BC(n)F(n)":[69],"populations).":[70],"The":[71],"Windows":[72],"version":[73],"of":[74],"was":[76],"developed":[77],"graphical":[80],"user":[81],"interface.":[82],"Alternatively,":[83],"command-line":[85],"versions":[86],"have":[87],"facility":[89],"be":[91],"run":[92],"in":[93],"other":[94],"prevalent":[95],"operating":[96],"systems,":[97],"such":[98],"Linux,":[100],"Unix":[101],"MacOS.":[103],"AVAILABILITY:":[104],"http://ibi.zju.edu.cn/software/qtlnetwork.":[105]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":21},{"year":2020,"cited_by_count":26},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":28},{"year":2017,"cited_by_count":34},{"year":2016,"cited_by_count":39},{"year":2015,"cited_by_count":35},{"year":2014,"cited_by_count":37},{"year":2013,"cited_by_count":27},{"year":2012,"cited_by_count":42}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
