{"id":"https://openalex.org/W2099432911","doi":"https://doi.org/10.1093/bioinformatics/btm487","title":"MDQC: a new quality assessment method for microarrays based on quality control reports","display_name":"MDQC: a new quality assessment method for microarrays based on quality control reports","publication_year":2007,"publication_date":"2007-10-12","ids":{"openalex":"https://openalex.org/W2099432911","doi":"https://doi.org/10.1093/bioinformatics/btm487","mag":"2099432911","pmid":"https://pubmed.ncbi.nlm.nih.gov/17933854"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/23/3162/49824030/bioinformatics_23_23_3162.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/23/3162/49824030/bioinformatics_23_23_3162.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010334833","display_name":"Gabriela V. Cohen Freue","orcid":"https://orcid.org/0000-0003-4526-0175"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Gabriela V. Cohen Freue","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008416148","display_name":"Zsuzsanna Hollander","orcid":"https://orcid.org/0000-0003-4889-996X"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Zsuzsanna Hollander","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070137120","display_name":"Enqing Shen","orcid":null},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Enqing Shen","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051823149","display_name":"Ruben H. Zamar","orcid":"https://orcid.org/0000-0002-5131-1488"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ruben H. Zamar","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044718702","display_name":"Robert Balshaw","orcid":"https://orcid.org/0000-0002-2455-8792"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Robert Balshaw","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009582530","display_name":"Andreas Scherer","orcid":"https://orcid.org/0000-0002-4254-7122"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andreas Scherer","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058694015","display_name":"Bruce M. McManus","orcid":"https://orcid.org/0000-0002-1685-2529"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Bruce McManus","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045508594","display_name":"Paul Keown","orcid":"https://orcid.org/0000-0001-6466-8251"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Paul Keown","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069711282","display_name":"W. Robert McMaster","orcid":null},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"W. Robert McMaster","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113567130","display_name":"Raymond T. Ng","orcid":"https://orcid.org/0000-0003-3692-8524"},"institutions":[{"id":"https://openalex.org/I1301114164","display_name":"Providence Health Care","ror":"https://ror.org/03qqdf793","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164"]},{"id":"https://openalex.org/I141074466","display_name":"Vancouver Coastal Health","ror":"https://ror.org/03bd8jh67","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I141074466"]},{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210150180","display_name":"Vancouver Coastal Health Research Institute","ror":"https://ror.org/04htzww22","country_code":"CA","type":"facility","lineage":["https://openalex.org/I141074466","https://openalex.org/I4210150180"]},{"id":"https://openalex.org/I4405268566","display_name":"Centre for Heart Lung Innovation","ror":"https://ror.org/01bc33a41","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1301114164","https://openalex.org/I141945490","https://openalex.org/I4405268566"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Raymond T. Ng","raw_affiliation_strings":["1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, 2Department of Statistics, 3Department of Pathology and Laboratory Medicine, 4Department of Medicine, 5Department of Medical Genetics, University of British Columbia, 6The James Hogg iCAPTURE Centre, Providence Health Care-University of British Columbia, 7Novartis Pharma AG, Basel and 8Vancouver Coastal Health Research Institute, Vancouver, British Columbia, Canada","institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5010334833"],"corresponding_institution_ids":["https://openalex.org/I1301114164","https://openalex.org/I141074466","https://openalex.org/I141945490","https://openalex.org/I4210150180","https://openalex.org/I4405268566"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":1.2707,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.78503965,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":99},"biblio":{"volume":"23","issue":"23","first_page":"3162","last_page":"3169"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9473999738693237,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9473999738693237,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.0203000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.003800000064074993,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mahalanobis-distance","display_name":"Mahalanobis distance","score":0.7923170924186707},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7583341598510742},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.7277281880378723},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6792680025100708},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.65281742811203},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.6183232069015503},{"id":"https://openalex.org/keywords/quality-assurance","display_name":"Quality assurance","score":0.5182847380638123},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.5160388946533203},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.48846331238746643},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.44512343406677246},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.4382338523864746},{"id":"https://openalex.org/keywords/quality-score","display_name":"Quality Score","score":0.43021631240844727},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26264047622680664},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.2526661455631256},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.22839593887329102},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08369335532188416}],"concepts":[{"id":"https://openalex.org/C1921717","wikidata":"https://www.wikidata.org/wiki/Q1334846","display_name":"Mahalanobis distance","level":2,"score":0.7923170924186707},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7583341598510742},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.7277281880378723},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6792680025100708},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.65281742811203},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.6183232069015503},{"id":"https://openalex.org/C106436119","wikidata":"https://www.wikidata.org/wiki/Q836575","display_name":"Quality assurance","level":3,"score":0.5182847380638123},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.5160388946533203},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.48846331238746643},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.44512343406677246},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.4382338523864746},{"id":"https://openalex.org/C2779346075","wikidata":"https://www.wikidata.org/wiki/Q7268763","display_name":"Quality Score","level":3,"score":0.43021631240844727},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26264047622680664},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.2526661455631256},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.22839593887329102},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08369335532188416},{"id":"https://openalex.org/C2778618615","wikidata":"https://www.wikidata.org/wiki/Q4008393","display_name":"External quality assessment","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btm487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/23/3162/49824030/bioinformatics_23_23_3162.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17933854","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17933854","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Evaluation Study"},{"id":"pmh:oai:doc.rero.ch:293628","is_oa":false,"landing_page_url":"http://doc.rero.ch/record/293628/files/btm487.pdf","pdf_url":"http://doc.rero.ch/record/293628/files/btm487.pdf","source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.561.371","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.561.371","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2007/10/12/bioinformatics.btm487.full.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm487","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm487","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/23/3162/49824030/bioinformatics_23_23_3162.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099432911.pdf","grobid_xml":"https://content.openalex.org/works/W2099432911.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W142073433","https://openalex.org/W576147189","https://openalex.org/W1118098720","https://openalex.org/W1533335653","https://openalex.org/W1540596182","https://openalex.org/W1860661692","https://openalex.org/W2010849103","https://openalex.org/W2023945135","https://openalex.org/W2055894834","https://openalex.org/W2111524581","https://openalex.org/W2112440119","https://openalex.org/W2113523261","https://openalex.org/W2117607208","https://openalex.org/W2124449497","https://openalex.org/W2126957978","https://openalex.org/W2130383124","https://openalex.org/W2149052195","https://openalex.org/W2483660720","https://openalex.org/W2498631646","https://openalex.org/W4301773902","https://openalex.org/W6605796479","https://openalex.org/W6632267817"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W4223449272","https://openalex.org/W2978247079","https://openalex.org/W2166887457","https://openalex.org/W4386482528","https://openalex.org/W3182289794","https://openalex.org/W2105868188","https://openalex.org/W1989045450"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,227],"process":[2],"of":[3,11,23,48,67,82,90,96,112,123,138,141,162,200,222],"producing":[4],"microarray":[5,50],"data":[6],"involves":[7],"multiple":[8],"steps,":[9],"some":[10],"which":[12],"may":[13,207],"suffer":[14],"from":[15,94,136,236],"technical":[16],"problems":[17],"and":[18,108,182,189,216],"seriously":[19],"damage":[20],"the":[21,24,46,53,68,80,87,121,139,142,163,170,183,201,205,209,223],"quality":[22,47,57,69,81,92,132,176,202,224],"data.":[25,143],"Thus,":[26,99],"it":[27,102,127],"is":[28,173,179],"essential":[29],"to":[30,44,63,78,212,218,229],"identify":[31,64,219],"those":[32,95,129,137],"arrays":[33,118,130,215],"with":[34],"low":[35],"quality.":[36],"This":[37],"article":[38],"addresses":[39],"two":[40,145],"questions:":[41],"(1)":[42],"how":[43,62],"assess":[45],"a":[49,74,151],"dataset":[51],"using":[52],"measures":[54,203],"provided":[55],"in":[56,166,204],"control":[58],"(QC)":[59],"reports;":[60],"(2)":[61],"possible":[65,220],"sources":[66],"problems.":[70,225],"RESULTS:":[71],"We":[72],"propose":[73],"novel":[75],"multivariate":[76,152],"approach":[77],"evaluate":[79],"an":[83],"array":[84],"that":[85,150,194],"examines":[86],"'Mahalanobis":[88],"distance'":[89],"its":[91],"attributes":[93,133],"other":[97],"arrays.":[98],"we":[100,148,192],"call":[101],"Mahalanobis":[103],"Distance":[104],"Quality":[105],"Control":[106],"(MDQC)":[107],"examine":[109],"different":[110],"approaches":[111],"this":[113],"method.":[114],"MDQC":[115,231],"flags":[116,128],"problematic":[117],"based":[119],"on":[120,198],"idea":[122],"outlier":[124],"detection,":[125],"i.e.":[126],"whose":[131],"jointly":[134],"depart":[135],"bulk":[140],"Using":[144],"case":[146],"studies,":[147],"show":[149,193],"analysis":[153],"gives":[154],"substantially":[155],"richer":[156],"information":[157],"than":[158],"analyzing":[159],"each":[160],"parameter":[161],"QC":[164,171],"report":[165,172,206],"isolation.":[167],"Moreover,":[168],"once":[169],"produced,":[174],"our":[175],"assessment":[177],"method":[178],"computationally":[180],"inexpensive":[181],"results":[184],"can":[185],"be":[186,234],"easily":[187],"visualized":[188],"interpreted.":[190],"Finally,":[191],"computing":[195],"these":[196],"distances":[197],"subsets":[199],"increase":[208],"method's":[210],"ability":[211],"detect":[213],"unusual":[214],"helps":[217],"reasons":[221],"AVAILABILITY:":[226],"library":[228],"implement":[230],"will":[232],"soon":[233],"available":[235],"Bioconductor.":[237]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":8}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
