{"id":"https://openalex.org/W2145628933","doi":"https://doi.org/10.1093/bioinformatics/btm464","title":"SnoReport: computational identification of snoRNAs with unknown targets","display_name":"SnoReport: computational identification of snoRNAs with unknown targets","publication_year":2007,"publication_date":"2007-09-25","ids":{"openalex":"https://openalex.org/W2145628933","doi":"https://doi.org/10.1093/bioinformatics/btm464","mag":"2145628933","pmid":"https://pubmed.ncbi.nlm.nih.gov/17895272"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm464","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm464","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/158/49044135/bioinformatics_24_2_158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/158/49044135/bioinformatics_24_2_158.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110241620","display_name":"Jana Hertel","orcid":null},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["AT","DE","US"],"is_corresponding":true,"raw_author_name":"Jana Hertel","raw_affiliation_strings":["1 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Wien, Austria, 2Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, 3Fraunhofer Institut f\u00fcr Zelltherapie und Immunologie Deutscher Platz 5e, 04103 Leipzig, Germany and 4Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Wien, Austria, 2Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, 3Fraunhofer Institut f\u00fcr Zelltherapie und Immunologie Deutscher Platz 5e, 04103 Leipzig, Germany and 4Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA","institution_ids":["https://openalex.org/I129774422","https://openalex.org/I1308548392","https://openalex.org/I4210145647"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011771355","display_name":"Ivo L. Hofacker","orcid":"https://orcid.org/0000-0001-7132-0800"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["AT","DE","US"],"is_corresponding":false,"raw_author_name":"Ivo L. Hofacker","raw_affiliation_strings":["1 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Wien, Austria, 2Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, 3Fraunhofer Institut f\u00fcr Zelltherapie und Immunologie Deutscher Platz 5e, 04103 Leipzig, Germany and 4Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Wien, Austria, 2Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, 3Fraunhofer Institut f\u00fcr Zelltherapie und Immunologie Deutscher Platz 5e, 04103 Leipzig, Germany and 4Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA","institution_ids":["https://openalex.org/I129774422","https://openalex.org/I1308548392","https://openalex.org/I4210145647"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016104736","display_name":"Peter F. Stadler","orcid":"https://orcid.org/0000-0002-5016-5191"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]},{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["AT","DE","US"],"is_corresponding":false,"raw_author_name":"Peter F. Stadler","raw_affiliation_strings":["1 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Wien, Austria, 2Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, 3Fraunhofer Institut f\u00fcr Zelltherapie und Immunologie Deutscher Platz 5e, 04103 Leipzig, Germany and 4Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstra\u00dfe 17, A-1090 Wien, Austria, 2Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstra\u00dfe 16-18, D-04107 Leipzig, 3Fraunhofer Institut f\u00fcr Zelltherapie und Immunologie Deutscher Platz 5e, 04103 Leipzig, Germany and 4Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA","institution_ids":["https://openalex.org/I129774422","https://openalex.org/I1308548392","https://openalex.org/I4210145647"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5110241620"],"corresponding_institution_ids":["https://openalex.org/I129774422","https://openalex.org/I1308548392","https://openalex.org/I4210145647"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":5.2109,"has_fulltext":true,"cited_by_count":120,"citation_normalized_percentile":{"value":0.96617052,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"24","issue":"2","first_page":"158","last_page":"164"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.8988000154495239,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.8988000154495239,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.05000000074505806,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.013399999588727951,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/small-nucleolar-rna","display_name":"Small nucleolar RNA","score":0.9463629126548767},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.7076787948608398},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5549043416976929},{"id":"https://openalex.org/keywords/complementarity","display_name":"Complementarity (molecular biology)","score":0.5348806381225586},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.4700789749622345},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38037991523742676},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.28585338592529297},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.251419335603714}],"concepts":[{"id":"https://openalex.org/C179255354","wikidata":"https://www.wikidata.org/wiki/Q284416","display_name":"Small nucleolar RNA","level":5,"score":0.9463629126548767},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7076787948608398},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5549043416976929},{"id":"https://openalex.org/C202269582","wikidata":"https://www.wikidata.org/wiki/Q2644277","display_name":"Complementarity (molecular biology)","level":2,"score":0.5348806381225586},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.4700789749622345},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38037991523742676},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.28585338592529297},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.251419335603714}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018390","descriptor_name":"Gene Targeting","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018390","descriptor_name":"Gene Targeting","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018390","descriptor_name":"Gene Targeting","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btm464","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm464","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/158/49044135/bioinformatics_24_2_158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17895272","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17895272","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.333.6071","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.333.6071","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2007/09/25/bioinformatics.btm464.full.pdf","raw_type":"text"},{"id":"pmh:info:fedora/oai:univie.ac.at:o:243612","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:243612","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:1367-4811","raw_type":"article"},{"id":"pmh:oai:fraunhofer.de:N-70239","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-70239.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer IZI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/215334","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/215334","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm464","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm464","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/24/2/158/49044135/bioinformatics_24_2_158.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145628933.pdf","grobid_xml":"https://content.openalex.org/works/W2145628933.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1543796220","https://openalex.org/W1592870802","https://openalex.org/W1974736226","https://openalex.org/W1975190048","https://openalex.org/W1990630809","https://openalex.org/W1990853496","https://openalex.org/W2009736453","https://openalex.org/W2022523272","https://openalex.org/W2022681782","https://openalex.org/W2023961115","https://openalex.org/W2024799598","https://openalex.org/W2025605104","https://openalex.org/W2035930185","https://openalex.org/W2042881722","https://openalex.org/W2050385516","https://openalex.org/W2055043387","https://openalex.org/W2058044724","https://openalex.org/W2094036688","https://openalex.org/W2095373580","https://openalex.org/W2099468911","https://openalex.org/W2103250001","https://openalex.org/W2104135642","https://openalex.org/W2106144124","https://openalex.org/W2106554405","https://openalex.org/W2112001233","https://openalex.org/W2113929062","https://openalex.org/W2116975768","https://openalex.org/W2119528722","https://openalex.org/W2122771148","https://openalex.org/W2126924668","https://openalex.org/W2127313513","https://openalex.org/W2127981985","https://openalex.org/W2134597758","https://openalex.org/W2136725005","https://openalex.org/W2137257434","https://openalex.org/W2138910750","https://openalex.org/W2140302584","https://openalex.org/W2142066620","https://openalex.org/W2149429041","https://openalex.org/W2151804955","https://openalex.org/W2153483580","https://openalex.org/W2153635508","https://openalex.org/W2157376556","https://openalex.org/W2158033466","https://openalex.org/W2158826174","https://openalex.org/W2161115392","https://openalex.org/W2170157200","https://openalex.org/W2187417714","https://openalex.org/W2342051973","https://openalex.org/W2431915405","https://openalex.org/W2803927613","https://openalex.org/W3120421331","https://openalex.org/W4298351830","https://openalex.org/W6635200387","https://openalex.org/W6677344130","https://openalex.org/W6679935693"],"related_works":["https://openalex.org/W4242611624","https://openalex.org/W2547129954","https://openalex.org/W2095206021","https://openalex.org/W2890134923","https://openalex.org/W3144341322","https://openalex.org/W2158875805","https://openalex.org/W2145052031","https://openalex.org/W4317612483","https://openalex.org/W2075676541","https://openalex.org/W3005149796"],"abstract_inverted_index":{"UNLABELLED:":[0],"Unlike":[1],"tRNAs":[2],"and":[3,47,64,77,116,141,157,185],"microRNAs,":[4],"both":[5],"classes":[6,152],"of":[7,14,17,58,79,86,108,122,136,153,172,180,200,209,212,246],"snoRNAs,":[8,88,154,160],"which":[9,89,96],"direct":[10],"two":[11,150],"distinct":[12],"types":[13],"chemical":[15],"modifications":[16],"uracil":[18],"residues,":[19],"have":[20,36,91,118],"proved":[21],"to":[22,26,70,75,127,147,229],"be":[23],"surprisingly":[24],"difficult":[25],"find":[27,176],"in":[28,253,263],"genomic":[29],"sequences.":[30,164],"Most":[31],"computational":[32],"approaches":[33],"so":[34],"far":[35],"explicitly":[37],"used":[38],"the":[39,62,103,149,178,181,223,227,254,272],"fact":[40],"that":[41,144,177,222,241],"snoRNAs":[42,250],"predominantly":[43],"target":[44,51,97,173],"ribosomal":[45],"RNAs":[46,111],"spliceosomal":[48],"RNAs.":[49],"The":[50,84,165,258,266],"is":[52,112,145,225,261,269],"specified":[53],"by":[54],"a":[55,119,134,190,197,206,230,233],"short":[56],"stretch":[57],"sequence":[59,68,183],"complementarity":[60,69],"between":[61],"snoRNA":[63,80],"its":[65],"target.":[66],"This":[67],"known":[71,93],"targets":[72],"crucially":[73],"contributes":[74],"sensitivity":[76],"specificity":[78],"gene":[81],"finding":[82],"algorithms.":[83],"discovery":[85],"'orphan'":[87,249],"either":[90],"no":[92],"target,":[94],"or":[95],"ordinary":[98],"protein-coding":[99],"mRNAs,":[100],"however,":[101],"begs":[102],"question":[104],"whether":[105],"this":[106,129],"class":[107],"'housekeeping'":[109],"non-coding":[110],"much":[113],"more":[114],"widespread":[115],"might":[117],"diverse":[120],"set":[121,199],"regulatory":[123],"functions.":[124],"In":[125],"order":[126],"approach":[128,167,224],"question,":[130],"we":[131],"present":[132],"here":[133],"combination":[135,179],"RNA":[137],"secondary":[138,186],"structure":[139,187],"prediction":[140],"machine":[142],"learning":[143],"designed":[146],"recognize":[148],"major":[151],"box":[155,158],"C/D":[156],"H/ACA":[159],"among":[161],"ncRNA":[162],"candidate":[163],"snoReport":[166,213,259],"deliberately":[168],"avoids":[169],"any":[170],"usage":[171],"information.":[174],"We":[175],"conserved":[182],"boxes":[184],"constraints":[188],"as":[189],"pre-filter":[191],"with":[192],"SVM":[193],"classifiers":[194],"based":[195],"on":[196,214],"small":[198],"structural":[201],"descriptors":[202],"are":[203,243],"sufficient":[204],"for":[205,238],"reliable":[207],"identification":[208],"snoRNAs.":[210],"Tests":[211],"data":[215],"from":[216,232],"several":[217],"recent":[218],"experimental":[219],"surveys":[220],"show":[221],"feasible;":[226],"application":[228],"dataset":[231],"large-scale":[234],"comparative":[235],"genomics":[236],"survey":[237],"ncRNAs":[239],"suggests":[240],"there":[242],"likely":[244],"hundreds":[245],"previously":[247],"undescribed":[248],"still":[251],"hidden":[252],"human":[255],"genome.":[256],"AVAILABILITY:":[257],"software":[260],"implemented":[262],"ANSI":[264],"C.":[265],"source":[267],"code":[268],"available":[270],"under":[271],"GNU":[273],"Public":[274],"License":[275],"at":[276],"http://www.bioinf.uni-leipzig.de/Software/snoReport.":[277]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-06-24T00:00:00"}