{"id":"https://openalex.org/W2137586542","doi":"https://doi.org/10.1093/bioinformatics/btm421","title":"Evolutionary analysis of enzymes using Chisel","display_name":"Evolutionary analysis of enzymes using Chisel","publication_year":2007,"publication_date":"2007-09-13","ids":{"openalex":"https://openalex.org/W2137586542","doi":"https://doi.org/10.1093/bioinformatics/btm421","mag":"2137586542","pmid":"https://pubmed.ncbi.nlm.nih.gov/17855417"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm421","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm421","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006953801","display_name":"Alexis Rodriguez","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexis A. Rodriguez","raw_affiliation_strings":["1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025650715","display_name":"Tanuja Bompada","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanuja Bompada","raw_affiliation_strings":["1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101928144","display_name":"Mustafa Syed","orcid":"https://orcid.org/0000-0002-8759-7537"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mustafa Syed","raw_affiliation_strings":["1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012908005","display_name":"Parantu K. Shah","orcid":"https://orcid.org/0000-0003-3014-215X"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Parantu K. Shah","raw_affiliation_strings":["1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039190520","display_name":"Natalia Maltsev","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Natalia Maltsev","raw_affiliation_strings":["1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"1 Mathematics and Computer Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Argonne, IL 60439, 2Computation Institute, The University of Chicago, 5640 S. Ellis Avenue, RI 405, Chicago, IL 60637 and 3Department of Human Genetics, The University of Chicago, 920 E. 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5006953801"],"corresponding_institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2689,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.59776551,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"22","first_page":"2961","last_page":"2968"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.7196965217590332},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6137643456459045},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6061294078826904},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5476753115653992},{"id":"https://openalex.org/keywords/shewanella-oneidensis","display_name":"Shewanella oneidensis","score":0.5201606750488281},{"id":"https://openalex.org/keywords/chisel","display_name":"Chisel","score":0.4943976402282715},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.49225226044654846},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.48160478472709656},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4797959625720978},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44454288482666016},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20789578557014465},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17731979489326477},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1274603307247162},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08365729451179504}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7196965217590332},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6137643456459045},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6061294078826904},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5476753115653992},{"id":"https://openalex.org/C2781170380","wikidata":"https://www.wikidata.org/wiki/Q4049396","display_name":"Shewanella oneidensis","level":3,"score":0.5201606750488281},{"id":"https://openalex.org/C2775962983","wikidata":"https://www.wikidata.org/wiki/Q474188","display_name":"Chisel","level":2,"score":0.4943976402282715},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.49225226044654846},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.48160478472709656},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4797959625720978},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44454288482666016},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20789578557014465},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17731979489326477},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1274603307247162},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08365729451179504},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm421","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm421","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17855417","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17855417","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1531116739","https://openalex.org/W1574491395","https://openalex.org/W1706564076","https://openalex.org/W1810634920","https://openalex.org/W1969051510","https://openalex.org/W1982481323","https://openalex.org/W1987939469","https://openalex.org/W1990453950","https://openalex.org/W1995407213","https://openalex.org/W2006211612","https://openalex.org/W2009968404","https://openalex.org/W2010219232","https://openalex.org/W2013410948","https://openalex.org/W2013691712","https://openalex.org/W2014239620","https://openalex.org/W2019188770","https://openalex.org/W2036792999","https://openalex.org/W2053582911","https://openalex.org/W2085277871","https://openalex.org/W2096525273","https://openalex.org/W2097706568","https://openalex.org/W2103017472","https://openalex.org/W2106882534","https://openalex.org/W2107903949","https://openalex.org/W2111373249","https://openalex.org/W2111973517","https://openalex.org/W2113601822","https://openalex.org/W2117077088","https://openalex.org/W2118675686","https://openalex.org/W2119195082","https://openalex.org/W2119464316","https://openalex.org/W2124637227","https://openalex.org/W2125546020","https://openalex.org/W2130479394","https://openalex.org/W2132926880","https://openalex.org/W2142113273","https://openalex.org/W2148000475","https://openalex.org/W2151562469","https://openalex.org/W2151831732","https://openalex.org/W2152770371","https://openalex.org/W2154139219","https://openalex.org/W2158714788","https://openalex.org/W2159620702","https://openalex.org/W2161241566","https://openalex.org/W2161732286","https://openalex.org/W2163105490","https://openalex.org/W2165674132","https://openalex.org/W2166498534","https://openalex.org/W2170825071","https://openalex.org/W2519703809","https://openalex.org/W3146331408","https://openalex.org/W3147254695","https://openalex.org/W3160760986","https://openalex.org/W4230932396","https://openalex.org/W4236324471","https://openalex.org/W6674647444"],"related_works":["https://openalex.org/W2327186020","https://openalex.org/W2280454186","https://openalex.org/W2148274908","https://openalex.org/W2215869640","https://openalex.org/W1916525861","https://openalex.org/W1556573660","https://openalex.org/W2738776981","https://openalex.org/W2605778348","https://openalex.org/W2606412596","https://openalex.org/W2349486687"],"abstract_inverted_index":{"Chisel":[0,29,60],"is":[1,22],"a":[2,56],"comprehensive":[3],"resource":[4],"that":[5],"contains":[6],"8575":[7],"clusters":[8],"and":[9,47,66],"subsequent":[10],"computational":[11],"models":[12],"specific":[13],"for":[14],"939":[15],"distinct":[16],"enzymatic":[17,33],"functions":[18],"and,":[19],"when":[20],"data":[21],"sufficient,":[23],"their":[24],"taxonomic":[25],"variations.":[26],"Application":[27],"of":[28,32,40,45,59],"to":[30],"identification":[31],"sequences":[34],"in":[35],"newly":[36],"sequenced":[37],"genomes,":[38],"analysis":[39,58],"organism-specific":[41],"metabolic":[42],"networks,":[43],"'binning'":[44],"metagenomes":[46],"other":[48,63],"biological":[49],"problems":[50],"are":[51],"presented.":[52],"We":[53],"also":[54],"provide":[55],"thorough":[57],"performance":[61],"with":[62],"similar":[64],"resources":[65],"manual":[67],"annotations":[68],"on":[69],"Shewanella":[70],"oneidensis":[71],"MR1":[72],"genome.":[73]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
