{"id":"https://openalex.org/W2140635350","doi":"https://doi.org/10.1093/bioinformatics/btm401","title":"Tools for visually exploring biological networks","display_name":"Tools for visually exploring biological networks","publication_year":2007,"publication_date":"2007-08-25","ids":{"openalex":"https://openalex.org/W2140635350","doi":"https://doi.org/10.1093/bioinformatics/btm401","mag":"2140635350","pmid":"https://pubmed.ncbi.nlm.nih.gov/17720984"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm401","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm401","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/20/2651/49816935/bioinformatics_23_20_2651.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/20/2651/49816935/bioinformatics_23_20_2651.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042451792","display_name":"Matthew Suderman","orcid":"https://orcid.org/0000-0002-2715-9930"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Matthew Suderman","raw_affiliation_strings":["McGill Centre for Bioinformatics, 3775 University Street, Montreal, QCH3A 2B4, Canada"],"affiliations":[{"raw_affiliation_string":"McGill Centre for Bioinformatics, 3775 University Street, Montreal, QCH3A 2B4, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059804416","display_name":"Michael Hallett","orcid":"https://orcid.org/0000-0001-6738-6786"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Hallett","raw_affiliation_strings":["McGill Centre for Bioinformatics, 3775 University Street, Montreal, QCH3A 2B4, Canada"],"affiliations":[{"raw_affiliation_string":"McGill Centre for Bioinformatics, 3775 University Street, Montreal, QCH3A 2B4, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5042451792"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":13.0402,"has_fulltext":false,"cited_by_count":240,"citation_normalized_percentile":{"value":0.99344629,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"23","issue":"20","first_page":"2651","last_page":"2659"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7114426493644714},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.43722712993621826},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3830483853816986},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3217754364013672}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7114426493644714},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.43722712993621826},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3830483853816986},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3217754364013672}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm401","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm401","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/20/2651/49816935/bioinformatics_23_20_2651.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17720984","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17720984","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.98.7030","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.98.7030","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/btm401v1.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm401","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm401","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/20/2651/49816935/bioinformatics_23_20_2651.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140635350.pdf"},"referenced_works_count":96,"referenced_works":["https://openalex.org/W1486817521","https://openalex.org/W1499796720","https://openalex.org/W1502432690","https://openalex.org/W1503013560","https://openalex.org/W1564928985","https://openalex.org/W1575542444","https://openalex.org/W1578104218","https://openalex.org/W1601296974","https://openalex.org/W1647075334","https://openalex.org/W1702766678","https://openalex.org/W1968410036","https://openalex.org/W1971425971","https://openalex.org/W1977186059","https://openalex.org/W1980558594","https://openalex.org/W1982428412","https://openalex.org/W1986662234","https://openalex.org/W1987242421","https://openalex.org/W1993153599","https://openalex.org/W1999994899","https://openalex.org/W2006933206","https://openalex.org/W2008620264","https://openalex.org/W2021053884","https://openalex.org/W2021239799","https://openalex.org/W2037036397","https://openalex.org/W2037442572","https://openalex.org/W2040630248","https://openalex.org/W2041396547","https://openalex.org/W2062185406","https://openalex.org/W2064885721","https://openalex.org/W2065769502","https://openalex.org/W2069162648","https://openalex.org/W2069486984","https://openalex.org/W2070815798","https://openalex.org/W2071353749","https://openalex.org/W2075220720","https://openalex.org/W2082621456","https://openalex.org/W2085277871","https://openalex.org/W2100474154","https://openalex.org/W2103017472","https://openalex.org/W2106202847","https://openalex.org/W2108036176","https://openalex.org/W2110280725","https://openalex.org/W2112651905","https://openalex.org/W2113630591","https://openalex.org/W2117364474","https://openalex.org/W2117555142","https://openalex.org/W2118628540","https://openalex.org/W2121905803","https://openalex.org/W2126382397","https://openalex.org/W2127073167","https://openalex.org/W2128712108","https://openalex.org/W2130494035","https://openalex.org/W2130863229","https://openalex.org/W2132034930","https://openalex.org/W2133188555","https://openalex.org/W2133298156","https://openalex.org/W2134999036","https://openalex.org/W2137881949","https://openalex.org/W2138756154","https://openalex.org/W2139483589","https://openalex.org/W2141695625","https://openalex.org/W2142913541","https://openalex.org/W2144407709","https://openalex.org/W2144636447","https://openalex.org/W2145889895","https://openalex.org/W2149209973","https://openalex.org/W2149694432","https://openalex.org/W2149991291","https://openalex.org/W2150908245","https://openalex.org/W2150947477","https://openalex.org/W2151225518","https://openalex.org/W2152653671","https://openalex.org/W2155320925","https://openalex.org/W2155723007","https://openalex.org/W2159418460","https://openalex.org/W2159675211","https://openalex.org/W2161062388","https://openalex.org/W2162505680","https://openalex.org/W2163480486","https://openalex.org/W2167222948","https://openalex.org/W2167482691","https://openalex.org/W2167846577","https://openalex.org/W3022981850","https://openalex.org/W3103071483","https://openalex.org/W4241202476","https://openalex.org/W4247420482","https://openalex.org/W4248318091","https://openalex.org/W6629873028","https://openalex.org/W6630163099","https://openalex.org/W6633704437","https://openalex.org/W6634572481","https://openalex.org/W6676198171","https://openalex.org/W6680843760","https://openalex.org/W6683996521","https://openalex.org/W6777060225","https://openalex.org/W6826721263"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":18},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":27}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
