{"id":"https://openalex.org/W2134059375","doi":"https://doi.org/10.1093/bioinformatics/btm271","title":"Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays","display_name":"Short oligonucleotide probes containing G-stacks display abnormal binding affinity on Affymetrix microarrays","publication_year":2007,"publication_date":"2007-05-30","ids":{"openalex":"https://openalex.org/W2134059375","doi":"https://doi.org/10.1093/bioinformatics/btm271","mag":"2134059375","pmid":"https://pubmed.ncbi.nlm.nih.gov/17537749"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm271","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm271","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2566/49857874/bioinformatics_23_19_2566.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2566/49857874/bioinformatics_23_19_2566.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018169284","display_name":"Chunlei Wu","orcid":"https://orcid.org/0000-0002-2629-6124"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chunlei Wu","raw_affiliation_strings":["1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA"],"affiliations":[{"raw_affiliation_string":"1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085589805","display_name":"Haitao Zhao","orcid":"https://orcid.org/0000-0002-3444-8044"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haitao Zhao","raw_affiliation_strings":["1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA"],"affiliations":[{"raw_affiliation_string":"1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105842546","display_name":"Keith Baggerly","orcid":null},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith Baggerly","raw_affiliation_strings":["1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA"],"affiliations":[{"raw_affiliation_string":"1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005111134","display_name":"R Carta","orcid":null},"institutions":[{"id":"https://openalex.org/I106165777","display_name":"University of Central Florida","ror":"https://ror.org/036nfer12","country_code":"US","type":"education","lineage":["https://openalex.org/I106165777"]},{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roberto Carta","raw_affiliation_strings":["1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA","UNIVERSITY OF CENTRAL FLORIDA"],"affiliations":[{"raw_affiliation_string":"1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I1343551460"]},{"raw_affiliation_string":"UNIVERSITY OF CENTRAL FLORIDA","institution_ids":["https://openalex.org/I106165777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100425554","display_name":"Li Zhang","orcid":"https://orcid.org/0000-0002-3617-2627"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Li Zhang","raw_affiliation_strings":["1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA"],"affiliations":[{"raw_affiliation_string":"1 Genomic Institute of Novartis Research Foundation, 10675 John Jay Hopkins Dr, San Diego, CA 92121, 2Department of Bioinformatics and Computational Biology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Box 237, Houston, TX 77030, 3Program in Biomathematics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences at Houston, 6767 Bertner Avenue, Houston, TX 77225-0334 and 4Department of Statistics and Actuarial Sciences, University of Central Florida, Orlando, FL 32816, USA","institution_ids":["https://openalex.org/I1343551460"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5018169284"],"corresponding_institution_ids":["https://openalex.org/I1343551460"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2775,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.8818151,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"23","issue":"19","first_page":"2566","last_page":"2572"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oligonucleotide","display_name":"Oligonucleotide","score":0.7813087701797485},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6643053293228149},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5198795795440674},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.508838951587677},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.4717080295085907},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36625567078590393},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3282989263534546},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2551079988479614},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.23248794674873352},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19466307759284973},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12712997198104858}],"concepts":[{"id":"https://openalex.org/C129312508","wikidata":"https://www.wikidata.org/wiki/Q133686","display_name":"Oligonucleotide","level":3,"score":0.7813087701797485},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6643053293228149},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5198795795440674},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.508838951587677},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.4717080295085907},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36625567078590393},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3282989263534546},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2551079988479614},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.23248794674873352},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19466307759284973},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12712997198104858}],"mesh":[{"descriptor_ui":"D000345","descriptor_name":"Affinity Labels","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000345","descriptor_name":"Affinity Labels","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000345","descriptor_name":"Affinity Labels","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017403","descriptor_name":"In Situ Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017403","descriptor_name":"In Situ Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017403","descriptor_name":"In Situ Hybridization","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018390","descriptor_name":"Gene Targeting","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018390","descriptor_name":"Gene Targeting","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018390","descriptor_name":"Gene Targeting","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btm271","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm271","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2566/49857874/bioinformatics_23_19_2566.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17537749","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17537749","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:stars.library.ucf.edu:facultybib2000-8800","is_oa":true,"landing_page_url":"https://stars.library.ucf.edu/facultybib2000/7801","pdf_url":null,"source":{"id":"https://openalex.org/S4210172555","display_name":"Journal of International Crisis and Risk Communication Research","issn_l":"2576-0017","issn":["2576-0017","2576-0025"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Bibliography 2000s","raw_type":"text"},{"id":"pmh:oai:stars.library.ucf.edu:scopus2000-7332","is_oa":true,"landing_page_url":"https://stars.library.ucf.edu/scopus2000/6333","pdf_url":null,"source":{"id":"https://openalex.org/S4210172555","display_name":"Journal of International Crisis and Risk Communication Research","issn_l":"2576-0017","issn":["2576-0017","2576-0025"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus Export 2000s","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm271","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm271","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/19/2566/49857874/bioinformatics_23_19_2566.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134059375.pdf","grobid_xml":"https://content.openalex.org/works/W2134059375.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W610729782","https://openalex.org/W1970761420","https://openalex.org/W1972960979","https://openalex.org/W1996146483","https://openalex.org/W2008420760","https://openalex.org/W2011092431","https://openalex.org/W2030165415","https://openalex.org/W2033041275","https://openalex.org/W2038437697","https://openalex.org/W2053200782","https://openalex.org/W2058065669","https://openalex.org/W2070491426","https://openalex.org/W2088137097","https://openalex.org/W2088456802","https://openalex.org/W2108653662","https://openalex.org/W2118782342","https://openalex.org/W2120423769","https://openalex.org/W2120865735","https://openalex.org/W2123316289","https://openalex.org/W2125255775","https://openalex.org/W2130494035","https://openalex.org/W2135827569","https://openalex.org/W2140606663","https://openalex.org/W2143613753","https://openalex.org/W2156246479","https://openalex.org/W2158761864","https://openalex.org/W2162871532","https://openalex.org/W2164683872","https://openalex.org/W2166976426","https://openalex.org/W2170989872","https://openalex.org/W2171396485","https://openalex.org/W2504441500","https://openalex.org/W4247420482","https://openalex.org/W6665095054","https://openalex.org/W6724932970"],"related_works":["https://openalex.org/W2041540252","https://openalex.org/W2085475821","https://openalex.org/W2048404795","https://openalex.org/W2034858540","https://openalex.org/W2415545834","https://openalex.org/W1547158732","https://openalex.org/W3203113381","https://openalex.org/W2210878528","https://openalex.org/W2366558827","https://openalex.org/W170658859"],"abstract_inverted_index":{"In":[0],"this":[1,25],"study,":[2],"we":[3,27,73],"describe":[4],"a":[5,35],"probe":[6],"performance":[7],"assessment":[8],"method":[9],"based":[10],"on":[11],"the":[12,15,69,87,92],"concordance":[13],"of":[14,102],"observed":[16,88],"signals":[17,89,122],"from":[18],"probes":[19,30,58,66,77,113],"that":[20,29,67,75,112],"share":[21],"common":[22],"targets.":[23],"Using":[24],"method,":[26],"found":[28,74],"containing":[31,114],"multiple":[32],"guanines":[33],"in":[34,47,143],"row":[36],"(G-stacks)":[37],"have":[38,118],"abnormal":[39],"binding":[40,103,132],"behavior":[41],"compared":[42],"with":[43,64],"other":[44,65,107],"probes,":[45],"both":[46],"gene":[48],"expression":[49],"assays":[50,53],"and":[51,123,146],"genotyping":[52],"using":[54],"Affymetrix":[55],"microarrays.":[56],"These":[57,109],"are":[59,78,138],"less":[60],"likely":[61,81],"to":[62,82,91,117,130,140],"covary":[63],"interrogate":[68],"same":[70],"genes.":[71],"Moreover,":[72],"these":[76],"much":[79],"more":[80],"produce":[83],"outliers":[84],"when":[85],"fitting":[86],"according":[90],"positional":[93],"dependent":[94],"nearest":[95],"neighbor":[96],"model,":[97],"which":[98],"gives":[99],"reasonable":[100],"estimates":[101],"affinity":[104],"for":[105],"most":[106],"probes.":[108],"results":[110],"suggest":[111],"G-stacks":[115],"tend":[116],"increased":[119],"cross":[120],"hybridization":[121,126],"reduced":[124],"target-specific":[125],"signals,":[127],"presumably":[128],"due":[129],"multiplex":[131],"forming":[133],"G-quartet":[134],"structures.":[135],"Our":[136],"findings":[137],"expected":[139],"be":[141],"useful":[142],"microarray":[144],"design":[145],"data":[147],"analysis.":[148]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}