{"id":"https://openalex.org/W2169896388","doi":"https://doi.org/10.1093/bioinformatics/btm195","title":"Information theory applied to the sparse gene ontology annotation network to predict novel gene function","display_name":"Information theory applied to the sparse gene ontology annotation network to predict novel gene function","publication_year":2007,"publication_date":"2007-07-01","ids":{"openalex":"https://openalex.org/W2169896388","doi":"https://doi.org/10.1093/bioinformatics/btm195","mag":"2169896388","pmid":"https://pubmed.ncbi.nlm.nih.gov/17646340"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm195","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm195","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i529/50718172/bioinformatics_23_13_i529.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i529/50718172/bioinformatics_23_13_i529.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102098496","display_name":"Ying Tao","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Tao","raw_affiliation_strings":["1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166","https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036638339","display_name":"Lee Sam","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee Sam","raw_affiliation_strings":["1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166","https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100627206","display_name":"Jianrong Li","orcid":"https://orcid.org/0000-0003-2382-6270"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianrong Li","raw_affiliation_strings":["1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166","https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109277899","display_name":"Carol Friedman","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol Friedman","raw_affiliation_strings":["1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166","https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074706648","display_name":"Yves A. Lussier","orcid":"https://orcid.org/0000-0001-9854-1005"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yves A. Lussier","raw_affiliation_strings":["1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biomedical Informatics, Columbia University, 622 West 168th Street, VC5, New York, NY 100322Center for Biomedical Informatics, The University of Chicago, 5841 S Maryland Avenue, Chicago, IL 60637, USA 3UCCRC, The University of Chicago, 5841\u2009S Maryland Avenue, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166","https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.7293,"has_fulltext":true,"cited_by_count":164,"citation_normalized_percentile":{"value":0.97042172,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"23","issue":"13","first_page":"i529","last_page":"i538"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9749000072479248,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9749000072479248,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.011699999682605267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0026000000070780516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7682112455368042},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6901633739471436},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.5166628360748291},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5083798766136169},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4925435483455658},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4909117817878723},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48496198654174805},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4542936682701111},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.44693949818611145},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4391821324825287},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4268590807914734},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30060380697250366},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.20474505424499512},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1740274727344513},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1277903914451599},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09532073140144348}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7682112455368042},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6901633739471436},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.5166628360748291},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5083798766136169},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4925435483455658},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4909117817878723},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48496198654174805},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4542936682701111},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.44693949818611145},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4391821324825287},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4268590807914734},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30060380697250366},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.20474505424499512},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1740274727344513},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1277903914451599},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09532073140144348},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007257","descriptor_name":"Information Theory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm195","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm195","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i529/50718172/bioinformatics_23_13_i529.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17646340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17646340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2882681","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2882681","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm195","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm195","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i529/50718172/bioinformatics_23_13_i529.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1455933425","display_name":null,"funder_award_id":"R01 LM007659","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G2708175070","display_name":null,"funder_award_id":"U54 CA121852","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3015377677","display_name":null,"funder_award_id":"R01 LM008635","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G3032457596","display_name":null,"funder_award_id":"R01LM008635","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4993193227","display_name":null,"funder_award_id":"R01LM007659","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7583224788","display_name":null,"funder_award_id":"1U54CA121852","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7972181056","display_name":null,"funder_award_id":"K22 LM008308","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8640840829","display_name":null,"funder_award_id":"K22LM008308","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2169896388.pdf","grobid_xml":"https://content.openalex.org/works/W2169896388.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W102264027","https://openalex.org/W246808545","https://openalex.org/W1486817521","https://openalex.org/W1496662025","https://openalex.org/W1538463803","https://openalex.org/W1546962148","https://openalex.org/W1647729745","https://openalex.org/W1704669313","https://openalex.org/W1776317115","https://openalex.org/W1968114652","https://openalex.org/W1978241768","https://openalex.org/W1982516880","https://openalex.org/W1986566140","https://openalex.org/W1988306622","https://openalex.org/W1989034333","https://openalex.org/W1991537543","https://openalex.org/W1991570251","https://openalex.org/W1992452843","https://openalex.org/W1999154602","https://openalex.org/W2010118680","https://openalex.org/W2011986160","https://openalex.org/W2027439534","https://openalex.org/W2032951307","https://openalex.org/W2042239239","https://openalex.org/W2045704708","https://openalex.org/W2046482984","https://openalex.org/W2055043387","https://openalex.org/W2076858905","https://openalex.org/W2079665010","https://openalex.org/W2082607144","https://openalex.org/W2084377579","https://openalex.org/W2088534163","https://openalex.org/W2092165279","https://openalex.org/W2096525273","https://openalex.org/W2100935296","https://openalex.org/W2102150307","https://openalex.org/W2103017472","https://openalex.org/W2103907281","https://openalex.org/W2106093878","https://openalex.org/W2109047523","https://openalex.org/W2109555487","https://openalex.org/W2115539205","https://openalex.org/W2117805756","https://openalex.org/W2119043225","https://openalex.org/W2127385662","https://openalex.org/W2127563440","https://openalex.org/W2130925474","https://openalex.org/W2130948145","https://openalex.org/W2131456688","https://openalex.org/W2133681442","https://openalex.org/W2134725489","https://openalex.org/W2138203479","https://openalex.org/W2138842411","https://openalex.org/W2143654815","https://openalex.org/W2144563318","https://openalex.org/W2146119511","https://openalex.org/W2152689720","https://openalex.org/W2157825442","https://openalex.org/W2159767718","https://openalex.org/W2162891889","https://openalex.org/W2165333281","https://openalex.org/W2167289895","https://openalex.org/W2171674404","https://openalex.org/W2317800347","https://openalex.org/W2953332543","https://openalex.org/W3016210511","https://openalex.org/W3017143921","https://openalex.org/W3199143553","https://openalex.org/W4230903726","https://openalex.org/W4240002127","https://openalex.org/W6670200328","https://openalex.org/W6675339850","https://openalex.org/W6676081686","https://openalex.org/W6677712588","https://openalex.org/W6679895617","https://openalex.org/W6680980791"],"related_works":["https://openalex.org/W2140593394","https://openalex.org/W2126225210","https://openalex.org/W2518973588","https://openalex.org/W4386637333","https://openalex.org/W2027534577","https://openalex.org/W2766608798","https://openalex.org/W2115034971","https://openalex.org/W2068916031","https://openalex.org/W2168662600","https://openalex.org/W2805949464"],"abstract_inverted_index":{"MOTIVATION:":[0],"Despite":[1],"advances":[2],"in":[3,23,122,142,202,243],"the":[4,8,22,104,130,184,191,211,217,264,287],"gene":[5,15,35,284],"annotation":[6],"process,":[7],"functions":[9,36,89],"of":[10,14,26,90,129,146,161,176,181,190,239,254,282],"a":[11,77,98,154,174,179,236,244,251],"large":[12],"portion":[13],"products":[16],"remain":[17],"insufficiently":[18],"characterized.":[19],"In":[20],"addition,":[21],"silico":[24],"prediction":[25,53,108],"novel":[27,78,283],"Gene":[28],"Ontology":[29],"(GO)":[30],"annotations":[31,194,285],"for":[32,62,183,216,263],"partially":[33],"characterized":[34],"or":[37,45],"processes":[38],"is":[39,135,274,296],"highly":[40,60,139],"dependent":[41],"on":[42,93,276],"reverse":[43],"genetic":[44],"functional":[46,164],"genomic":[47],"approaches.":[48,232],"To":[49,205],"our":[50,156,206],"knowledge,":[51,207],"no":[52],"method":[54,134],"has":[55],"been":[56],"demonstrated":[57,173],"to":[58,69,85,115,137],"be":[59,261],"accurate":[61,140],"sparsely":[63,143,187],"annotated":[64,127,144,188],"GO":[65,95,131,193,197,219,266,289],"terms":[66,198],"(those":[67],"associated":[68],"fewer":[70],"than":[71,166,227],"10":[72],"genes).":[73],"RESULTS:":[74],"We":[75],"propose":[76],"approach,":[79],"information":[80,295],"theory-based":[81],"semantic":[82],"similarity":[83],"(ITSS),":[84],"automatically":[86],"predict":[87],"molecular":[88],"genes":[91,201],"based":[92],"existing":[94],"annotations.":[96],"Using":[97],"10-fold":[99,170],"cross-validation,":[100],"we":[101,248],"demonstrate":[102],"that":[103,250],"ITSS":[105],"algorithm":[106,185],"obtains":[107],"accuracies":[109],"(precision":[110],"97%,":[111],"recall":[112,180],"77%)":[113],"comparable":[114],"other":[116,293],"machine":[117],"learning":[118],"algorithms":[119,150],"when":[120],"compared":[121],"similar":[123],"conditions":[124,226],"over":[125,186],"densely":[126],"portions":[128,145],"datasets.":[132],"This":[133],"able":[136],"generate":[138],"predictions":[141,165,241,281],"GO,":[147],"where":[148],"previous":[149,167],"have":[151],"failed.":[152],"As":[153],"result,":[155],"technique":[157],"generates":[158],"an":[159],"order":[160],"magnitude":[162],"more":[163,224,228],"methods.":[168],"A":[169],"cross":[171],"validation":[172,215],"precision":[175,253],"90%":[177],"at":[178,298,306],"36%":[182],"networks":[189],"recent":[192],"(about":[195],"1400":[196],"and":[199,292],"11,000":[200],"Homo":[203],"sapiens).":[204],"this":[208],"article":[209],"presents":[210],"first":[212],"historical":[213,245],"rollback":[214,246],"predicted":[218],"annotations,":[220],"which":[221],"may":[222],"represent":[223],"realistic":[225],"widely":[229],"used":[230],"cross-validation":[231],"By":[233],"manually":[234],"assessing":[235],"random":[237],"sample":[238],"100":[240],"conducted":[242],"evaluation,":[247],"estimate":[249],"minimum":[252],"51%":[255],"(95%":[256],"confidence":[257],"interval:":[258],"43-58%)":[259],"can":[260],"achieved":[262],"human":[265],"Annotation":[267,290],"file":[268],"dated":[269],"2003.":[270],"AVAILABILITY:":[271],"The":[272,278],"program":[273],"available":[275,297,305],"request.":[277],"97,732":[279],"positive":[280],"from":[286],"2005":[288],"dataset":[291],"supplementary":[294],"http://phenos.bsd.uchicago.edu/ITSS/.":[299],"SUPPLEMENTARY":[300],"INFORMATION:":[301],"Supplementary":[302],"data":[303],"are":[304],"Bioinformatics":[307],"online.":[308]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":13},{"year":2012,"cited_by_count":13}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
