{"id":"https://openalex.org/W2096119887","doi":"https://doi.org/10.1093/bioinformatics/btm177","title":"Translation initiation site prediction on a genomic scale: beauty in simplicity","display_name":"Translation initiation site prediction on a genomic scale: beauty in simplicity","publication_year":2007,"publication_date":"2007-07-01","ids":{"openalex":"https://openalex.org/W2096119887","doi":"https://doi.org/10.1093/bioinformatics/btm177","mag":"2096119887","pmid":"https://pubmed.ncbi.nlm.nih.gov/17646326"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm177","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i418/23705275/btm177.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i418/23705275/btm177.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001585713","display_name":"Yvan Saeys","orcid":"https://orcid.org/0000-0002-0415-1506"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Yvan Saeys","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002088014","display_name":"Thomas Abeel","orcid":"https://orcid.org/0000-0002-7205-7431"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Thomas Abeel","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068472419","display_name":"Sven Degroeve","orcid":"https://orcid.org/0000-0001-8349-3370"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Sven Degroeve","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070738091","display_name":"Yves Van de Peer","orcid":"https://orcid.org/0000-0003-4327-3730"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yves Van de Peer","raw_affiliation_strings":["1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Plant Systems Biology, VIB, Technologiepark 927, B-9052 Ghent, Belgium, 2Department of Molecular Genetics, Ghent University, Ghent, Belgium and 3Pronota, Technologiepark - Zwijnaarde 927, B-9052 Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001585713"],"corresponding_institution_ids":["https://openalex.org/I32597200","https://openalex.org/I4210098178"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3324,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.79526748,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"23","issue":"13","first_page":"i418","last_page":"i423"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.3334999978542328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.3334999978542328,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.3151000142097473,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.06520000100135803,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6491458415985107},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6460016965866089},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6212972402572632},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4797167181968689},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.4481373429298401},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4126584529876709},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4100986123085022},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4031200110912323},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36557477712631226},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34496819972991943},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2691758871078491},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2510383129119873},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21784961223602295}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6491458415985107},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6460016965866089},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6212972402572632},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4797167181968689},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.4481373429298401},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4126584529876709},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4100986123085022},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4031200110912323},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36557477712631226},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34496819972991943},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2691758871078491},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2510383129119873},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21784961223602295},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002891","descriptor_name":"Chromosomes, Human, Pair 21","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002891","descriptor_name":"Chromosomes, Human, Pair 21","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002891","descriptor_name":"Chromosomes, Human, Pair 21","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010442","descriptor_name":"Peptide Chain Initiation, Translational","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010442","descriptor_name":"Peptide Chain Initiation, Translational","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010442","descriptor_name":"Peptide Chain Initiation, Translational","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm177","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i418/23705275/btm177.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17646326","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17646326","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:417321","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/417321","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm177","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/13/i418/23705275/btm177.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096119887.pdf","grobid_xml":"https://content.openalex.org/works/W2096119887.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1541321639","https://openalex.org/W1940988901","https://openalex.org/W1963789055","https://openalex.org/W1966216209","https://openalex.org/W1983716193","https://openalex.org/W2007959190","https://openalex.org/W2022169621","https://openalex.org/W2039680623","https://openalex.org/W2045348184","https://openalex.org/W2058426472","https://openalex.org/W2081530255","https://openalex.org/W2101530945","https://openalex.org/W2106291043","https://openalex.org/W2114281975","https://openalex.org/W2126598626","https://openalex.org/W2133253129","https://openalex.org/W2135120651","https://openalex.org/W2142350587","https://openalex.org/W2145991872","https://openalex.org/W2168847939","https://openalex.org/W2477347738","https://openalex.org/W2774989360","https://openalex.org/W6632163435","https://openalex.org/W6640420169","https://openalex.org/W6645892526","https://openalex.org/W6675248708","https://openalex.org/W6678667821","https://openalex.org/W6679771098"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W193851735","https://openalex.org/W3178279768","https://openalex.org/W2898732673","https://openalex.org/W2773861473","https://openalex.org/W1971903861","https://openalex.org/W2410053581"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,147],"correct":[2],"identification":[3,34,47],"of":[4,27,35,48,77,89,143,155,160],"translation":[5],"initiation":[6],"sites":[7],"(TIS)":[8],"remains":[9],"a":[10,74,129,151,158,163,184,192],"challenging":[11],"problem":[12],"for":[13,105,132,195],"computational":[14,29],"methods":[15,94,116],"that":[16,72,113,139,173],"automatically":[17],"try":[18],"to":[19,102],"solve":[20],"this":[21,83],"problem.":[22],"Furthermore,":[23],"the":[24,33,42,46,52,62,87,96,114,119,123,136,141,174,196],"lion's":[25],"share":[26],"these":[28,144],"techniques":[30],"focuses":[31],"on":[32,51,162,179],"TIS":[36,49,92,106,133],"in":[37,41,70,108,183],"transcript":[38,109],"data.":[39,110],"However,":[40],"gene":[43,186],"prediction":[44,107,187],"context":[45],"occurs":[50],"genomic":[53,97,124],"level,":[54,98],"which":[55],"makes":[56],"things":[57],"even":[58],"harder":[59],"because":[60],"at":[61,95,122,135,157,201],"genome":[63,137],"level":[64,138],"many":[65],"more":[66],"pseudo-TIS":[67],"occur,":[68],"resulting":[69],"models":[71,104],"achieve":[73],"higher":[75],"number":[76],"false":[78,152],"positive":[79,153],"predictions.":[80],"RESULTS:":[81],"In":[82],"article,":[84],"we":[85,127],"evaluate":[86],"performance":[88],"several":[90],"'simple'":[91],"recognition":[93,134],"and":[99,126,182,191],"compare":[100],"them":[101],"state-of-the-art":[103],"We":[111],"conclude":[112],"simple":[115,145,185],"largely":[117],"outperform":[118],"complex":[120],"ones":[121],"scale,":[125],"propose":[128],"new":[130,148],"model":[131,149,175],"combines":[140],"strengths":[142],"models.":[146],"obtains":[150],"rate":[154],"0.125":[156],"sensitivity":[159],"0.80":[161],"well":[164],"annotated":[165],"human":[166],"chromosome":[167],"(chromosome":[168],"21).":[169],"Detailed":[170],"analyses":[171],"show":[172],"is":[176],"useful,":[177],"both":[178],"its":[180],"own":[181],"setting.":[188],"AVAILABILITY:":[189],"Datafiles":[190],"web":[193],"interface":[194],"StartScan":[197],"program":[198],"are":[199],"available":[200],"http://bioinformatics.psb.ugent.be/supplementary_data/.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
