{"id":"https://openalex.org/W2146791205","doi":"https://doi.org/10.1093/bioinformatics/btm117","title":"Classification based upon gene expression data: bias and precision of error rates","display_name":"Classification based upon gene expression data: bias and precision of error rates","publication_year":2007,"publication_date":"2007-03-28","ids":{"openalex":"https://openalex.org/W2146791205","doi":"https://doi.org/10.1093/bioinformatics/btm117","mag":"2146791205","pmid":"https://pubmed.ncbi.nlm.nih.gov/17392326"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm117","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1363/516094/btm117.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1363/516094/btm117.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085593721","display_name":"Ian Wood","orcid":"https://orcid.org/0000-0002-0711-8189"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I217937681","display_name":"QIMR Berghofer Medical Research Institute","ror":"https://ror.org/004y8wk30","country_code":"AU","type":"facility","lineage":["https://openalex.org/I217937681"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ian A. Wood","raw_affiliation_strings":["1 School of Mathematical Sciences, Queensland University of Technology, Gardens Point, GPO Box 2434, Brisbane, QLD 4001, Australia and 2Queensland Institute of Medical Research, Post Office, Royal Brisbane Hospital, 300 Herston Rd., Herston, QLD 4029, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematical Sciences, Queensland University of Technology, Gardens Point, GPO Box 2434, Brisbane, QLD 4001, Australia and 2Queensland Institute of Medical Research, Post Office, Royal Brisbane Hospital, 300 Herston Rd., Herston, QLD 4029, Australia","institution_ids":["https://openalex.org/I217937681","https://openalex.org/I160993911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020502354","display_name":"Peter M. Visscher","orcid":"https://orcid.org/0000-0002-2143-8760"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I217937681","display_name":"QIMR Berghofer Medical Research Institute","ror":"https://ror.org/004y8wk30","country_code":"AU","type":"facility","lineage":["https://openalex.org/I217937681"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Peter M. Visscher","raw_affiliation_strings":["1 School of Mathematical Sciences, Queensland University of Technology, Gardens Point, GPO Box 2434, Brisbane, QLD 4001, Australia and 2Queensland Institute of Medical Research, Post Office, Royal Brisbane Hospital, 300 Herston Rd., Herston, QLD 4029, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematical Sciences, Queensland University of Technology, Gardens Point, GPO Box 2434, Brisbane, QLD 4001, Australia and 2Queensland Institute of Medical Research, Post Office, Royal Brisbane Hospital, 300 Herston Rd., Herston, QLD 4029, Australia","institution_ids":["https://openalex.org/I217937681","https://openalex.org/I160993911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001588690","display_name":"Kerrie Mengersen","orcid":"https://orcid.org/0000-0001-8625-9168"},"institutions":[{"id":"https://openalex.org/I160993911","display_name":"Queensland University of Technology","ror":"https://ror.org/03pnv4752","country_code":"AU","type":"education","lineage":["https://openalex.org/I160993911"]},{"id":"https://openalex.org/I217937681","display_name":"QIMR Berghofer Medical Research Institute","ror":"https://ror.org/004y8wk30","country_code":"AU","type":"facility","lineage":["https://openalex.org/I217937681"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kerrie L. Mengersen","raw_affiliation_strings":["1 School of Mathematical Sciences, Queensland University of Technology, Gardens Point, GPO Box 2434, Brisbane, QLD 4001, Australia and 2Queensland Institute of Medical Research, Post Office, Royal Brisbane Hospital, 300 Herston Rd., Herston, QLD 4029, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematical Sciences, Queensland University of Technology, Gardens Point, GPO Box 2434, Brisbane, QLD 4001, Australia and 2Queensland Institute of Medical Research, Post Office, Royal Brisbane Hospital, 300 Herston Rd., Herston, QLD 4029, Australia","institution_ids":["https://openalex.org/I217937681","https://openalex.org/I160993911"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.0378,"has_fulltext":true,"cited_by_count":76,"citation_normalized_percentile":{"value":0.94681781,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"23","issue":"11","first_page":"1363","last_page":"1370"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5618102550506592},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5547637343406677},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4128507673740387},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41080430150032043},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.38894030451774597},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.38702133297920227},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37734103202819824},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32189303636550903},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2782074213027954},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2704279124736786},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17776334285736084},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07487362623214722}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5618102550506592},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5547637343406677},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4128507673740387},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41080430150032043},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.38894030451774597},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.38702133297920227},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37734103202819824},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32189303636550903},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2782074213027954},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2704279124736786},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17776334285736084},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07487362623214722}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016477","descriptor_name":"Artifacts","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm117","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1363/516094/btm117.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17392326","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17392326","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:163321","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm117","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm117","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1363/516094/btm117.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G8936150905","display_name":null,"funder_award_id":"389892","funder_id":"https://openalex.org/F4320334705","funder_display_name":"National Health and Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334705","display_name":"National Health and Medical Research Council","ror":"https://ror.org/011kf5r70"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146791205.pdf","grobid_xml":"https://content.openalex.org/works/W2146791205.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W118074277","https://openalex.org/W1528177290","https://openalex.org/W1594031697","https://openalex.org/W1727290854","https://openalex.org/W1966626540","https://openalex.org/W1991567646","https://openalex.org/W2040615655","https://openalex.org/W2105494575","https://openalex.org/W2105981176","https://openalex.org/W2107956883","https://openalex.org/W2110298216","https://openalex.org/W2112081648","https://openalex.org/W2114754216","https://openalex.org/W2115358726","https://openalex.org/W2117047805","https://openalex.org/W2127314075","https://openalex.org/W2128432722","https://openalex.org/W2129476886","https://openalex.org/W2131315497","https://openalex.org/W2138550913","https://openalex.org/W2141007997","https://openalex.org/W2143426320","https://openalex.org/W2330820318","https://openalex.org/W2490800645","https://openalex.org/W3125904670","https://openalex.org/W4247934745","https://openalex.org/W6677374737","https://openalex.org/W6679194949"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W1922851888","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W2374091470","https://openalex.org/W1902660783","https://openalex.org/W4388218547","https://openalex.org/W2379703849"],"abstract_inverted_index":{"MOTIVATION:":[0],"Gene":[1],"expression":[2,114],"data":[3,115],"offer":[4],"a":[5,77,124,164,204],"large":[6],"number":[7],"of":[8,15,29,43,51,67,82,101,109,145],"potentially":[9],"useful":[10],"predictors":[11],"for":[12,80,245],"the":[13,49,85,143,182,196,221,232],"classification":[14,110],"tissue":[16],"samples":[17],"into":[18],"classes,":[19],"such":[20,36],"as":[21,37],"diseased":[22],"and":[23,45,61,76,116,128,148,163,203,239],"non-diseased.":[24],"The":[25,55],"predictive":[26],"error":[27,52,71,93,168,185,191,212],"rate":[28,53,94],"classifiers":[30,218],"can":[31,139,170],"be":[32,118,140,171],"estimated":[33,92,174],"using":[34,84,150,160],"methods":[35],"cross-validation.":[38,153,177],"We":[39,208],"have":[40],"investigated":[41],"issues":[42,56],"interpretation":[44],"potential":[46],"bias":[47,83,100,138,158],"in":[48,105,120],"reporting":[50,189],"estimates.":[54],"considered":[57],"here":[58],"are":[59,242],"optimization":[60,97,157],"selection":[62],"biases,":[63],"sampling":[64],"effects,":[65],"measures":[66],"misclassification":[68,205],"rate,":[69,186],"baseline":[70,211],"rates,":[72],"two-level":[73,151,176,228],"external":[74,152,229],"cross-validation":[75,162,230],"novel":[78],"proposal":[79],"detection":[81],"permutation":[86],"mean.":[87],"RESULTS:":[88],"Reporting":[89],"an":[90,96,106],"optimal":[91],"incurs":[95],"bias.":[98],"Downward":[99],"3-5%":[102],"was":[103],"found":[104],"existing":[107,133],"study":[108],"based":[111],"on":[112],"gene":[113],"may":[117],"endemic":[119],"similar":[121],"studies.":[122],"Using":[123],"simulated":[125],"non-informative":[126],"dataset":[127,237],"two":[129],"example":[130],"datasets":[131],"from":[132,215,248],"studies,":[134],"we":[135,187],"show":[136],"how":[137],"detected":[141],"through":[142],"use":[144,247],"label":[146],"permutations":[147],"avoided":[149],"Some":[154],"studies":[155],"avoid":[156],"by":[159],"single-level":[161],"test":[165],"set,":[166],"but":[167],"rates":[169,192,213],"more":[172],"accurately":[173],"via":[175],"In":[178],"addition":[179],"to":[180],"estimating":[181],"simple":[183],"overall":[184],"recommend":[188],"class":[190,201],"plus":[193],"where":[194],"possible":[195],"conditional":[197],"risk":[198],"incorporating":[199],"prior":[200],"probabilities":[202],"cost":[206],"matrix.":[207],"also":[209],"describe":[210],"derived":[214],"three":[216],"trivial":[217],"which":[219,226],"ignore":[220],"predictors.":[222],"AVAILABILITY:":[223],"R":[224],"code":[225],"implements":[227],"with":[231],"PAMR":[233],"package,":[234],"experiment":[235],"code,":[236],"details":[238],"additional":[240],"figures":[241],"freely":[243],"available":[244],"non-commercial":[246],"http://www.maths.qut.edu.au/profiles/wood/permr.jsp":[249]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
