{"id":"https://openalex.org/W2164620224","doi":"https://doi.org/10.1093/bioinformatics/btm115","title":"SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data","display_name":"SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data","publication_year":2007,"publication_date":"2007-03-28","ids":{"openalex":"https://openalex.org/W2164620224","doi":"https://doi.org/10.1093/bioinformatics/btm115","mag":"2164620224","pmid":"https://pubmed.ncbi.nlm.nih.gov/17392328"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1410/49813022/bioinformatics_23_11_1410.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1410/49813022/bioinformatics_23_11_1410.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043310715","display_name":"Hagit Shatkay","orcid":"https://orcid.org/0000-0001-6953-3970"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["CA","DE"],"is_corresponding":true,"raw_author_name":"Hagit Shatkay","raw_affiliation_strings":["1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I204722609","https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082137496","display_name":"Annette H\u00f6glund","orcid":null},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Annette H\u00f6glund","raw_affiliation_strings":["1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I204722609","https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058133079","display_name":"Scott T. Brady","orcid":"https://orcid.org/0000-0002-7520-8485"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Scott Brady","raw_affiliation_strings":["1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I204722609","https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080637586","display_name":"Torsten Blum","orcid":"https://orcid.org/0000-0003-1216-2157"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Torsten Blum","raw_affiliation_strings":["1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I204722609","https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028148209","display_name":"Pierre D\u00f6nnes","orcid":"https://orcid.org/0000-0002-4613-2952"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Pierre D\u00f6nnes","raw_affiliation_strings":["1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I204722609","https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Oliver Kohlbacher","raw_affiliation_strings":["1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computing, Queen\u2019s University, Kingston, Ontario, Canada and 2Division for Simulation of Biological Systems, ZBIT/WSI, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I204722609","https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5043310715"],"corresponding_institution_ids":["https://openalex.org/I204722609","https://openalex.org/I8087733"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":6.4818,"has_fulltext":true,"cited_by_count":127,"citation_normalized_percentile":{"value":0.97670421,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"23","issue":"11","first_page":"1410","last_page":"1417"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6572052240371704},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6472594738006592},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.566216230392456},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48133453726768494},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44877541065216064},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.4139423370361328},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35123348236083984},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3366866409778595},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.24898546934127808},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18872228264808655},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14502733945846558},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07689398527145386}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6572052240371704},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6472594738006592},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.566216230392456},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48133453726768494},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44877541065216064},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.4139423370361328},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35123348236083984},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3366866409778595},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.24898546934127808},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18872228264808655},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14502733945846558},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07689398527145386}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D013347","descriptor_name":"Subcellular Fractions","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1410/49813022/bioinformatics_23_11_1410.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17392328","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17392328","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.130.1965","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.130.1965","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/23/11/1410.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm115","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm115","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/11/1410/49813022/bioinformatics_23_11_1410.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2164620224.pdf","grobid_xml":"https://content.openalex.org/works/W2164620224.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W277606711","https://openalex.org/W1480376833","https://openalex.org/W1510526001","https://openalex.org/W1553682320","https://openalex.org/W1617571838","https://openalex.org/W1954715867","https://openalex.org/W1978570414","https://openalex.org/W1992016490","https://openalex.org/W1994704939","https://openalex.org/W2009341227","https://openalex.org/W2010671788","https://openalex.org/W2013341848","https://openalex.org/W2022616728","https://openalex.org/W2082925319","https://openalex.org/W2093723065","https://openalex.org/W2101968184","https://openalex.org/W2103568877","https://openalex.org/W2114494712","https://openalex.org/W2115159360","https://openalex.org/W2117987251","https://openalex.org/W2121869529","https://openalex.org/W2124306486","https://openalex.org/W2126276057","https://openalex.org/W2129095580","https://openalex.org/W2129716198","https://openalex.org/W2130925474","https://openalex.org/W2137601093","https://openalex.org/W2145224695","https://openalex.org/W2146620899","https://openalex.org/W2149822709","https://openalex.org/W2152458080","https://openalex.org/W2153635508","https://openalex.org/W2155042162","https://openalex.org/W2155744163","https://openalex.org/W2158120166","https://openalex.org/W2160072419","https://openalex.org/W2161890636","https://openalex.org/W2170700642","https://openalex.org/W2406531951","https://openalex.org/W2791170912","https://openalex.org/W3120421331","https://openalex.org/W4213149192","https://openalex.org/W4240237073","https://openalex.org/W6610275947","https://openalex.org/W6630424276","https://openalex.org/W6640904281","https://openalex.org/W6652621944","https://openalex.org/W6656316794","https://openalex.org/W6674070085","https://openalex.org/W6677875524","https://openalex.org/W6682671216","https://openalex.org/W6683473195","https://openalex.org/W6683704841"],"related_works":["https://openalex.org/W2384110740","https://openalex.org/W2389499846","https://openalex.org/W2128345772","https://openalex.org/W2374123826","https://openalex.org/W2620675477","https://openalex.org/W2374381481","https://openalex.org/W2890567665","https://openalex.org/W256932276","https://openalex.org/W2797478058","https://openalex.org/W2805151640"],"abstract_inverted_index":{"MOTIVATION:":[0],"Knowing":[1],"the":[2,8,42,71,87,99,150],"localization":[3,28,36,72],"of":[4,59,73,80,152,159],"a":[5,23,56,65,127,156],"protein":[6],"within":[7],"cell":[9],"helps":[10],"elucidate":[11],"its":[12,17,20,105,134],"role":[13],"in":[14,41,98,101],"biological":[15],"processes,":[16],"function":[18],"and":[19,82,108,110,137],"potential":[21],"as":[22,123,125],"drug":[24],"target.":[25],"Thus,":[26],"subcellular":[27],"prediction":[29,37],"is":[30,168],"an":[31],"active":[32],"research":[33],"area.":[34],"Numerous":[35],"systems":[38],"are":[39],"described":[40],"literature;":[43],"some":[44],"focus":[45],"on":[46,119,126,143],"specific":[47],"localizations":[48],"or":[49],"organisms,":[50],"while":[51],"others":[52],"attempt":[53],"to":[54,132,155],"cover":[55],"wide":[57],"range":[58],"localizations.":[60],"RESULTS:":[61],"We":[62,116,147],"introduce":[63],"SherLoc,":[64,163],"new":[66,128],"comprehensive":[67],"system":[68],"for":[69],"predicting":[70],"eukaryotic":[74],"proteins.":[75,161],"It":[76],"integrates":[77,111],"several":[78],"types":[79],"sequence":[81],"text-based":[83],"features.":[84,115],"While":[85],"applying":[86,153],"widely":[88],"used":[89,121],"support":[90],"vector":[91],"machines":[92],"(SVMs),":[93],"SherLoc's":[94],"main":[95],"novelty":[96],"lies":[97],"way":[100],"which":[102],"it":[103],"selects":[104],"text":[106],"sources":[107],"features,":[109],"those":[112],"with":[113,165],"sequence-based":[114],"test":[117,133],"SherLoc":[118,140,154],"previously":[120],"datasets,":[122],"well":[124],"set":[129,158],"devised":[130],"specifically":[131],"predictive":[135],"power,":[136],"show":[138],"that":[139],"consistently":[141],"improves":[142],"previous":[144],"reported":[145],"results.":[146],"also":[148],"report":[149],"results":[151],"large":[157],"yet-unlocalized":[160],"AVAILABILITY:":[162],"along":[164],"Supplementary":[166],"Information,":[167],"available":[169],"at:":[170],"http://www-bs.informatik.uni-tuebingen.de/Services/SherLoc/":[171]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":16},{"year":2012,"cited_by_count":6}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
