{"id":"https://openalex.org/W2135884466","doi":"https://doi.org/10.1093/bioinformatics/btm060","title":"Semantic Web Service provision: a realistic framework for Bioinformatics programmers","display_name":"Semantic Web Service provision: a realistic framework for Bioinformatics programmers","publication_year":2007,"publication_date":"2007-03-24","ids":{"openalex":"https://openalex.org/W2135884466","doi":"https://doi.org/10.1093/bioinformatics/btm060","mag":"2135884466","pmid":"https://pubmed.ncbi.nlm.nih.gov/17384428"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm060","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/9/1178/49858711/bioinformatics_23_9_1178.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/9/1178/49858711/bioinformatics_23_9_1178.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032104010","display_name":"Paul M. K. Gordon","orcid":"https://orcid.org/0000-0003-2881-1713"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Paul M.K. Gordon","raw_affiliation_strings":["University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072430983","display_name":"Quang M. Trinh","orcid":"https://orcid.org/0000-0002-3602-2290"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Quang Trinh","raw_affiliation_strings":["University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1","institution_ids":["https://openalex.org/I168635309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009552437","display_name":"Christoph W. Sensen","orcid":"https://orcid.org/0000-0001-9604-8962"},"institutions":[{"id":"https://openalex.org/I168635309","display_name":"University of Calgary","ror":"https://ror.org/03yjb2x39","country_code":"CA","type":"education","lineage":["https://openalex.org/I168635309"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Christoph W. Sensen","raw_affiliation_strings":["University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1","institution_ids":["https://openalex.org/I168635309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5032104010"],"corresponding_institution_ids":["https://openalex.org/I168635309"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":12.4752,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.98126849,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"9","first_page":"1178","last_page":"1180"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4805999994277954,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4805999994277954,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.17649999260902405,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.13410000503063202,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8137604594230652},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.721136212348938},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6255919933319092},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.6137188673019409},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5881207585334778},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5511910915374756},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4657033085823059},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4607035219669342},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.45840173959732056},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.4171731770038605},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.34267035126686096}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8137604594230652},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.721136212348938},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6255919933319092},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.6137188673019409},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5881207585334778},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5511910915374756},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4657033085823059},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4607035219669342},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.45840173959732056},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.4171731770038605},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.34267035126686096},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm060","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/9/1178/49858711/bioinformatics_23_9_1178.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17384428","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17384428","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm060","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/9/1178/49858711/bioinformatics_23_9_1178.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2135884466.pdf"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1549410596","https://openalex.org/W1578304052","https://openalex.org/W1996902131","https://openalex.org/W2018590530","https://openalex.org/W2117724905","https://openalex.org/W2125076649","https://openalex.org/W2142110984","https://openalex.org/W2161679242","https://openalex.org/W2168103533","https://openalex.org/W2501765443","https://openalex.org/W6632913249"],"related_works":["https://openalex.org/W96612179","https://openalex.org/W2770234245","https://openalex.org/W2093262417","https://openalex.org/W2566006169","https://openalex.org/W2123131699","https://openalex.org/W2987774938","https://openalex.org/W913131694","https://openalex.org/W650116260","https://openalex.org/W632915154","https://openalex.org/W2378329187"],"abstract_inverted_index":{"UNLABELLED:":[0],"Several":[1],"semantic":[2,42],"Web":[3,43],"Services":[4,44],"clients":[5],"for":[6,17,51,63,100,110],"Bioinformatics":[7],"have":[8,20,24],"been":[9,21],"released,":[10],"but":[11],"to":[12,37,39,80],"date":[13],"no":[14],"support":[15],"systems":[16],"service":[18],"providers":[19],"described.":[22],"We":[23],"created":[25],"a":[26,71],"framework":[27,119],"('MobyServlet')":[28],"that":[29],"very":[30],"simply":[31],"allows":[32],"an":[33,47,56],"existing":[34,48],"Java":[35,49,127],"application":[36],"conform":[38],"the":[40,60,74,81,126],"MOBY-S":[41,64,89,98],"protocol.":[45],"Using":[46],"program":[50],"codon-pair":[52],"bias":[53],"determination":[54],"as":[55,112],"example,":[57],"we":[58],"enumerate":[59],"steps":[61],"required":[62],"compliance.":[65],"With":[66],"minimal":[67],"programming":[68],"effort,":[69],"such":[70],"deployment":[72],"has":[73],"advantages":[75],"of:":[76],"(1)":[77],"wider":[78],"exposure":[79],"user":[82],"community":[83],"by":[84],"automatic":[85,94],"inclusion":[86],"in":[87],"all":[88],"client":[90],"programs":[91],"and":[92,102,120],"(2)":[93],"interoperability":[95],"with":[96],"other":[97],"services":[99],"input":[101],"output.":[103],"Complex":[104],"on-line":[105],"analysis":[106],"will":[107],"become":[108],"easier":[109],"biologists":[111],"more":[113],"developers":[114],"adopt":[115],"MOBY-S.":[116],"AVAILABILITY:":[117],"The":[118],"documentation":[121],"are":[122],"freely":[123],"available":[124],"from":[125],"developer's":[128],"section":[129],"of":[130],"http://www.biomoby.org/.":[131]},"counts_by_year":[],"updated_date":"2026-08-12T21:12:35.861297","created_date":"2025-10-10T00:00:00"}
