{"id":"https://openalex.org/W2165891191","doi":"https://doi.org/10.1093/bioinformatics/btm039","title":"Gepard: a rapid and sensitive tool for creating dotplots on genome scale","display_name":"Gepard: a rapid and sensitive tool for creating dotplots on genome scale","publication_year":2007,"publication_date":"2007-02-19","ids":{"openalex":"https://openalex.org/W2165891191","doi":"https://doi.org/10.1093/bioinformatics/btm039","mag":"2165891191","pmid":"https://pubmed.ncbi.nlm.nih.gov/17309896"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm039","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm039","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023342647","display_name":"Jan Krumsiek","orcid":"https://orcid.org/0000-0003-4734-3791"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan Krumsiek","raw_affiliation_strings":["1 Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Neuherberg and 2Technische Universit\u00e4t M\u00fcnchen, Department of Genome Oriented Bioinformatics, Am Forum 1, 85354 Freising, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Neuherberg and 2Technische Universit\u00e4t M\u00fcnchen, Department of Genome Oriented Bioinformatics, Am Forum 1, 85354 Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016382034","display_name":"Roland Arnold","orcid":"https://orcid.org/0000-0002-7496-7578"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roland Arnold","raw_affiliation_strings":["1 Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Neuherberg and 2Technische Universit\u00e4t M\u00fcnchen, Department of Genome Oriented Bioinformatics, Am Forum 1, 85354 Freising, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Neuherberg and 2Technische Universit\u00e4t M\u00fcnchen, Department of Genome Oriented Bioinformatics, Am Forum 1, 85354 Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051653794","display_name":"Thomas Rattei","orcid":"https://orcid.org/0000-0002-0592-7791"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Rattei","raw_affiliation_strings":["1 Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Neuherberg and 2Technische Universit\u00e4t M\u00fcnchen, Department of Genome Oriented Bioinformatics, Am Forum 1, 85354 Freising, Germany"],"affiliations":[{"raw_affiliation_string":"1 Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolst\u00e4dter Landstra\u00dfe 1, 85764 Neuherberg and 2Technische Universit\u00e4t M\u00fcnchen, Department of Genome Oriented Bioinformatics, Am Forum 1, 85354 Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5023342647"],"corresponding_institution_ids":["https://openalex.org/I62916508"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.5543,"has_fulltext":false,"cited_by_count":769,"citation_normalized_percentile":{"value":0.89793714,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"23","issue":"8","first_page":"1026","last_page":"1028"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9495000243186951,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9466000199317932,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8914604783058167},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8241796493530273},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7624781131744385},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.7122368812561035},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6279182434082031},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.516669511795044},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.35066914558410645},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3311879634857178},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2655245363712311}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8914604783058167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8241796493530273},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7624781131744385},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.7122368812561035},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6279182434082031},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.516669511795044},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.35066914558410645},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3311879634857178},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2655245363712311},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btm039","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm039","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17309896","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17309896","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:5816","is_oa":false,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=5816","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics 23, 1026-1028 (2007)","raw_type":""},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/83ad0f35-9258-4d42-922b-c8565fd91ba2","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/83ad0f35-9258-4d42-922b-c8565fd91ba2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Krumsiek, J, Arnold, R & Rattei, T 2007, 'Gepard : a rapid and sensitive tool for creating dotplots on genome scale', Bioinformatics, vol. 23, no. 8, pp. 1026-8. https://doi.org/10.1093/bioinformatics/btm039","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/83ad0f35-9258-4d42-922b-c8565fd91ba2","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/portal/en/publications/gepard(83ad0f35-9258-4d42-922b-c8565fd91ba2).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Krumsiek, J, Arnold, R & Rattei, T 2007, 'Gepard : a rapid and sensitive tool for creating dotplots on genome scale', Bioinformatics, vol. 23, no. 8, pp. 1026-8. https://doi.org/10.1093/bioinformatics/btm039","raw_type":"article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1556105006","https://openalex.org/W2018030091","https://openalex.org/W2035625064","https://openalex.org/W2107282968","https://openalex.org/W2111220881","https://openalex.org/W2125554071","https://openalex.org/W2130564474","https://openalex.org/W2134283755","https://openalex.org/W2137917513","https://openalex.org/W2169610486"],"related_works":["https://openalex.org/W2350278424","https://openalex.org/W2361861616","https://openalex.org/W2071432835","https://openalex.org/W4234371507","https://openalex.org/W2263699433","https://openalex.org/W4299534542","https://openalex.org/W2377979023","https://openalex.org/W1628824497","https://openalex.org/W4239401009","https://openalex.org/W3089767008"],"abstract_inverted_index":{"Both":[0],"source":[1],"codes":[2],"and":[3],"executable":[4],"binaries":[5],"are":[6],"available":[7],"at":[8],"http://mips.gsf.de/services/analysis/gepard":[9]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":48},{"year":2024,"cited_by_count":74},{"year":2023,"cited_by_count":64},{"year":2022,"cited_by_count":62},{"year":2021,"cited_by_count":66},{"year":2020,"cited_by_count":69},{"year":2019,"cited_by_count":85},{"year":2018,"cited_by_count":67},{"year":2017,"cited_by_count":62},{"year":2016,"cited_by_count":43},{"year":2015,"cited_by_count":27},{"year":2014,"cited_by_count":30},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":15}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}