{"id":"https://openalex.org/W2110468786","doi":"https://doi.org/10.1093/bioinformatics/btm027","title":"C<scp>opy</scp>C<scp>at</scp>\u2009: cophylogenetic analysis tool","display_name":"C<scp>opy</scp>C<scp>at</scp>\u2009: cophylogenetic analysis tool","publication_year":2007,"publication_date":"2007-01-31","ids":{"openalex":"https://openalex.org/W2110468786","doi":"https://doi.org/10.1093/bioinformatics/btm027","mag":"2110468786","pmid":"https://pubmed.ncbi.nlm.nih.gov/17267434"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm027","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/898/577741/btm027.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/898/577741/btm027.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041087984","display_name":"Jan P. Meier\u2010Kolthoff","orcid":"https://orcid.org/0000-0001-9105-9814"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan P. Meier-Kolthoff","raw_affiliation_strings":["1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012073525","display_name":"Alexander F. Auch","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander F. Auch","raw_affiliation_strings":["1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026094905","display_name":"Daniel H. Huson","orcid":"https://orcid.org/0000-0002-2961-604X"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel H. Huson","raw_affiliation_strings":["1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056895519","display_name":"Markus G\u00f6ker","orcid":"https://orcid.org/0000-0002-5144-6200"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus G\u00f6ker","raw_affiliation_strings":["1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5041087984"],"corresponding_institution_ids":["https://openalex.org/I8087733"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6061,"has_fulltext":true,"cited_by_count":101,"citation_normalized_percentile":{"value":0.82659784,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"23","issue":"7","first_page":"898","last_page":"900"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11074","display_name":"Helminth infection and control","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/copycat","display_name":"Copycat","score":0.9569543600082397},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.5886561274528503},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5614832043647766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.552844762802124},{"id":"https://openalex.org/keywords/parasite-hosting","display_name":"Parasite hosting","score":0.41110605001449585},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23905104398727417},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23858779668807983},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21139761805534363},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1581290066242218},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08272495865821838}],"concepts":[{"id":"https://openalex.org/C130191384","wikidata":"https://www.wikidata.org/wiki/Q2996887","display_name":"Copycat","level":2,"score":0.9569543600082397},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.5886561274528503},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5614832043647766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.552844762802124},{"id":"https://openalex.org/C71928629","wikidata":"https://www.wikidata.org/wiki/Q804206","display_name":"Parasite hosting","level":2,"score":0.41110605001449585},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23905104398727417},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23858779668807983},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21139761805534363},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1581290066242218},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08272495865821838}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006790","descriptor_name":"Host-Parasite Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006790","descriptor_name":"Host-Parasite Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006790","descriptor_name":"Host-Parasite Interactions","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btm027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm027","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/898/577741/btm027.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17267434","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17267434","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:uni-augsburg.opus-bayern.de:106780","is_oa":false,"landing_page_url":"https://opus.bibliothek.uni-augsburg.de/opus4/frontdoor/index/index/docId/106780","pdf_url":null,"source":{"id":"https://openalex.org/S4306400930","display_name":"OPUS (Augsburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119916105","host_organization_name":"Augsburg University","host_organization_lineage":["https://openalex.org/I119916105"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm027","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm027","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/898/577741/btm027.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2110468786.pdf","grobid_xml":"https://content.openalex.org/works/W2110468786.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W253059816","https://openalex.org/W1702913289","https://openalex.org/W2003197664","https://openalex.org/W2048405441","https://openalex.org/W2096535679","https://openalex.org/W2127474816","https://openalex.org/W2131042289","https://openalex.org/W2138798117","https://openalex.org/W2930291257","https://openalex.org/W6807850126","https://openalex.org/W6893495218"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2613429440","https://openalex.org/W209811107","https://openalex.org/W3154216649","https://openalex.org/W1671735962","https://openalex.org/W1993214311","https://openalex.org/W2237846221","https://openalex.org/W2782366856","https://openalex.org/W2371705542"],"abstract_inverted_index":{"Results":[0],"of":[1],"the":[2],"real-world":[3],"example":[4],"can":[5],"be":[6],"found":[7],"at":[8],"http://www-ab.informatik.uni-tuebingen.de/software/copycat":[9],"or":[10],"Bioinformatics":[11],"online.":[12]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":11}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2016-06-24T00:00:00"}
