{"id":"https://openalex.org/W2101598685","doi":"https://doi.org/10.1093/bioinformatics/btm023","title":"Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data","display_name":"Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data","publication_year":2007,"publication_date":"2007-02-03","ids":{"openalex":"https://openalex.org/W2101598685","doi":"https://doi.org/10.1093/bioinformatics/btm023","mag":"2101598685","pmid":"https://pubmed.ncbi.nlm.nih.gov/17277333"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btm023","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm023","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/903/49823968/bioinformatics_23_7_903.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/903/49823968/bioinformatics_23_7_903.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067274615","display_name":"Pedro A. F. Galante","orcid":"https://orcid.org/0000-0002-4820-4155"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["BR","US"],"is_corresponding":true,"raw_author_name":"Pedro A. F. Galante","raw_affiliation_strings":["1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I17974374","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065981909","display_name":"Jeffrey M. Trimarchi","orcid":"https://orcid.org/0000-0001-7923-1538"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Jeff Trimarchi","raw_affiliation_strings":["1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I17974374","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032594307","display_name":"Constance L. Cepko","orcid":"https://orcid.org/0000-0002-9945-6387"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Constance L. Cepko","raw_affiliation_strings":["1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I17974374","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035667949","display_name":"Sandro J. de Souza","orcid":"https://orcid.org/0000-0002-1012-3237"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Sandro J. de Souza","raw_affiliation_strings":["1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I17974374","https://openalex.org/I4210143601"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084415954","display_name":"Lucila Ohno\u2010Machado","orcid":"https://orcid.org/0000-0002-8005-7327"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Lucila Ohno-Machado","raw_affiliation_strings":["1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I17974374","https://openalex.org/I4210143601"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024500196","display_name":"Winston Patrick Kuo","orcid":null},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]},{"id":"https://openalex.org/I4210143601","display_name":"Decision Systems (United States)","ror":"https://ror.org/0434dpa13","country_code":"US","type":"company","lineage":["https://openalex.org/I4210143601"]}],"countries":["BR","US"],"is_corresponding":false,"raw_author_name":"Winston P. Kuo","raw_affiliation_strings":["1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I17974374","https://openalex.org/I4210143601"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067274615"],"corresponding_institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I1344073410","https://openalex.org/I136199984","https://openalex.org/I17974374","https://openalex.org/I4210143601"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.5549,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.84272789,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"23","issue":"7","first_page":"903","last_page":"905"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.131400004029274,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.131400004029274,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.07699999958276749,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.06769999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6441649794578552},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6385315656661987},{"id":"https://openalex.org/keywords/sage","display_name":"SAGE","score":0.5442320704460144},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4579547643661499},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3003368377685547},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29049354791641235}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6441649794578552},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6385315656661987},{"id":"https://openalex.org/C2775870830","wikidata":"https://www.wikidata.org/wiki/Q3379200","display_name":"SAGE","level":2,"score":0.5442320704460144},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4579547643661499},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3003368377685547},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29049354791641235},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btm023","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm023","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/903/49823968/bioinformatics_23_7_903.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17277333","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17277333","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btm023","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btm023","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/7/903/49823968/bioinformatics_23_7_903.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G660123638","display_name":null,"funder_award_id":"5D43TW007015-02","funder_id":"https://openalex.org/F4320337356","funder_display_name":"Fogarty International Center"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337356","display_name":"Fogarty International Center","ror":"https://ror.org/02xey9a22"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101598685.pdf","grobid_xml":"https://content.openalex.org/works/W2101598685.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1968164578","https://openalex.org/W2006074076","https://openalex.org/W2010888033","https://openalex.org/W2013378651","https://openalex.org/W2033585891","https://openalex.org/W2041956242","https://openalex.org/W2050163545","https://openalex.org/W2066266579","https://openalex.org/W2073883677","https://openalex.org/W2107903949","https://openalex.org/W2118675686","https://openalex.org/W2125558666","https://openalex.org/W2126030228","https://openalex.org/W2127415182","https://openalex.org/W2131610601","https://openalex.org/W2782267736","https://openalex.org/W4213387068","https://openalex.org/W4230932396"],"related_works":["https://openalex.org/W151193258","https://openalex.org/W1892467659","https://openalex.org/W1529400504","https://openalex.org/W2348710178","https://openalex.org/W3201926073","https://openalex.org/W1871911958","https://openalex.org/W73525116","https://openalex.org/W2998403542","https://openalex.org/W2808586768","https://openalex.org/W2113303564"],"abstract_inverted_index":{"UNLABELLED:":[0],"A":[1],"critical":[2],"step":[3],"in":[4],"any":[5],"SAGE,":[6],"MPSS":[7,64],"and":[8,69,77],"SBS":[9,70],"data":[10,73,85],"analysis":[11],"is":[12,32],"tag-to-gene":[13,38,50],"assignment.":[14],"Current":[15],"available":[16,87],"tools":[17],"are":[18,86],"limited":[19],"by":[20],"a":[21,36,43,48],"tag-by-tag":[22],"annotation":[23],"process":[24],"and/or":[25],"do":[26],"not":[27],"provide":[28],"the":[29],"dataset":[30],"that":[31,46],"used":[33],"to":[34],"produce":[35],"complete":[37],"mapping.":[39],"We":[40],"developed":[41],"ACTG,":[42],"web-based":[44],"application":[45],"allows":[47],"large-scale":[49],"mapping":[51],"using":[52],"several":[53],"reference":[54],"datasets.":[55],"ACTG":[56],"can":[57],"annotate":[58],"SAGE":[59],"(14":[60],"or":[61,66],"21":[62],"bp),":[63],"(17":[65],"20":[67],"bp)":[68,72],"(16":[71],"for":[74],"both":[75],"human":[76],"mouse":[78],"organisms.":[79],"AVAILABILITY:":[80],"http://retina.med.harvard.edu/ACTG/.":[81],"SUPPLEMENTARY":[82],"INFORMATION:":[83],"Supplementary":[84],"at":[88],"Bioinformatics":[89],"online.":[90]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
