{"id":"https://openalex.org/W2103612114","doi":"https://doi.org/10.1093/bioinformatics/btl685","title":"LFM-Pro: a tool for detecting significant local structural sites in proteins","display_name":"LFM-Pro: a tool for detecting significant local structural sites in proteins","publication_year":2007,"publication_date":"2007-01-19","ids":{"openalex":"https://openalex.org/W2103612114","doi":"https://doi.org/10.1093/bioinformatics/btl685","mag":"2103612114","pmid":"https://pubmed.ncbi.nlm.nih.gov/17237050"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl685","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/6/709/49820816/bioinformatics_23_6_709.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/6/709/49820816/bioinformatics_23_6_709.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016398897","display_name":"Ahmet Sa\u00e7an","orcid":"https://orcid.org/0000-0002-3570-3270"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["TR","US"],"is_corresponding":true,"raw_author_name":"Ahmet Sacan","raw_affiliation_strings":["1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I201799495","https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102900844","display_name":"\u00d6zg\u00fcr \u00d6zt\u00fcrk","orcid":"https://orcid.org/0000-0003-2605-4587"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["TR","US"],"is_corresponding":false,"raw_author_name":"Ozgur Ozturk","raw_affiliation_strings":["1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I201799495","https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078571347","display_name":"Hakan Ferhatosmano\u011flu","orcid":"https://orcid.org/0000-0002-5181-4712"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["TR","US"],"is_corresponding":false,"raw_author_name":"Hakan Ferhatosmanoglu","raw_affiliation_strings":["1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I201799495","https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101536052","display_name":"Yusu Wang","orcid":"https://orcid.org/0000-0001-7950-4348"},"institutions":[{"id":"https://openalex.org/I201799495","display_name":"Middle East Technical University","ror":"https://ror.org/014weej12","country_code":"TR","type":"education","lineage":["https://openalex.org/I201799495"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["TR","US"],"is_corresponding":false,"raw_author_name":"Yusu Wang","raw_affiliation_strings":["1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Engineering, Middle East Technical University, Ankara, Turkey, 2Computer Science and Engineering Department and 3Biomedical Informatics Department, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I201799495","https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5016398897"],"corresponding_institution_ids":["https://openalex.org/I201799495","https://openalex.org/I52357470"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":1.5104,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.81469569,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"23","issue":"6","first_page":"709","last_page":"716"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7712000012397766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7712000012397766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.09080000221729279,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.04830000177025795,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-family","display_name":"Protein family","score":0.5737938284873962},{"id":"https://openalex.org/keywords/structural-classification-of-proteins-database","display_name":"Structural Classification of Proteins database","score":0.5389659404754639},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5202249884605408},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5160617232322693},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5060262084007263},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.473240464925766},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4644154906272888},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.419941782951355},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38550570607185364},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3503391146659851},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3396945595741272},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30982357263565063},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2143496572971344},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1360463798046112}],"concepts":[{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.5737938284873962},{"id":"https://openalex.org/C58773245","wikidata":"https://www.wikidata.org/wiki/Q4832556","display_name":"Structural Classification of Proteins database","level":3,"score":0.5389659404754639},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5202249884605408},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5160617232322693},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5060262084007263},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.473240464925766},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4644154906272888},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.419941782951355},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38550570607185364},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3503391146659851},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3396945595741272},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30982357263565063},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2143496572971344},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1360463798046112},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btl685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl685","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/6/709/49820816/bioinformatics_23_6_709.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17237050","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17237050","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Evaluation Study"},{"id":"pmh:oai:https://open.metu.edu.tr:11511/67849","is_oa":true,"landing_page_url":"https://hdl.handle.net/11511/67849","pdf_url":"https://open.metu.edu.tr/bitstream/handle/11511/67849/index.pdf","source":{"id":"https://openalex.org/S4306402495","display_name":"OpenMETU (Middle East Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I201799495","host_organization_name":"Middle East Technical University","host_organization_lineage":["https://openalex.org/I201799495"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl685","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/6/709/49820816/bioinformatics_23_6_709.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G222768804","display_name":null,"funder_award_id":"DE\u2010FG02\u2010","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2337835581","display_name":"SCALABLE STORAGE AND EFFICIENT RETRIEVAL OF LARGE SCALE, HIGH DIMENSIONAL SCIENTIFIC AND BIOMEDICAL DATA","funder_award_id":"FG0203ER25573","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4416275943","display_name":"FEATURE EXTRACTION, CHARACTERIZATION, AND VISUALIZATION FOR PROTEIN INTERACTION VIA GEOMETRIC AND TOPOLOGICAL METHODS","funder_award_id":"FG02-06ER25735","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6473113437","display_name":"CAREER: Exploration of Dynamic Sequences in Scientific Databases","funder_award_id":"0546713","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309374","display_name":"Ohio State University","ror":"https://ror.org/00rs6vg23"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103612114.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W56333015","https://openalex.org/W1969261142","https://openalex.org/W1992115216","https://openalex.org/W1992446047","https://openalex.org/W1998931880","https://openalex.org/W2022058405","https://openalex.org/W2035376403","https://openalex.org/W2068580350","https://openalex.org/W2080653934","https://openalex.org/W2083888884","https://openalex.org/W2085277871","https://openalex.org/W2089052645","https://openalex.org/W2091758818","https://openalex.org/W2101449937","https://openalex.org/W2103933992","https://openalex.org/W2108797863","https://openalex.org/W2114782816","https://openalex.org/W2117164735","https://openalex.org/W2123070828","https://openalex.org/W2130179054","https://openalex.org/W2133452849","https://openalex.org/W2145358391","https://openalex.org/W2151785844","https://openalex.org/W2153153865","https://openalex.org/W2168300379","https://openalex.org/W2171962405","https://openalex.org/W3013843370","https://openalex.org/W4285719527","https://openalex.org/W4389615663","https://openalex.org/W6600311773","https://openalex.org/W6648444592","https://openalex.org/W6648535386","https://openalex.org/W6659383588","https://openalex.org/W6667647971","https://openalex.org/W6674757391","https://openalex.org/W6675446855","https://openalex.org/W6675917728","https://openalex.org/W6678704193","https://openalex.org/W6684950874","https://openalex.org/W6685112786"],"related_works":["https://openalex.org/W2015538044","https://openalex.org/W2052253960","https://openalex.org/W2480412556","https://openalex.org/W2382607599","https://openalex.org/W2016461833","https://openalex.org/W3197541072","https://openalex.org/W2760085659","https://openalex.org/W2147802381","https://openalex.org/W1983625232","https://openalex.org/W2167420772"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,155,180,209],"rapidly":[2],"growing":[3],"protein":[4,32,153],"structure":[5],"repositories":[6],"have":[7],"opened":[8],"up":[9],"new":[10],"opportunities":[11],"for":[12,72,126,151,217],"discovery":[13],"and":[14,18,44,52,78,111,142,157,170,200,211],"analysis":[15],"of":[16,35,40,100,133,139,159,168,194,198],"functional":[17],"evolutionary":[19],"relationships":[20],"among":[21],"proteins.":[22],"Detecting":[23],"conserved":[24],"structural":[25,98],"sites":[26,77,193],"that":[27,183],"are":[28,49,119,145,161,214],"unique":[29],"to":[30,54,91,94,129],"a":[31,70,123,131,136,148,172,195],"family":[33,132,167,197],"is":[34,106,186],"great":[36],"value":[37],"in":[38,66,189,201],"identification":[39],"functionally":[41],"important":[42],"atoms":[43,93],"residues.":[45],"Currently":[46],"available":[47,216],"methods":[48],"computationally":[50],"expensive":[51],"fail":[53],"detect":[55,95],"biologically":[56],"significant":[57,97],"local":[58,76],"features.":[59,207],"RESULTS:":[60],"We":[61],"propose":[62],"Local":[63],"Feature":[64],"Mining":[65],"Proteins":[67],"(LFM-Pro)":[68],"as":[69],"framework":[71],"automatically":[73],"discovering":[74],"family-specific":[75],"the":[79,88,101,109,152,191,205,212],"features":[80,118,144],"associated":[81],"with":[82,178],"these":[83,115],"sites.":[84],"Our":[85],"method":[86,185],"uses":[87],"distance":[89],"field":[90],"backbone":[92],"geometrically":[96],"centers":[99],"protein.":[102],"A":[103],"feature":[104],"vector":[105],"generated":[107],"from":[108,135],"geometrical":[110],"biochemical":[112],"environment":[113],"around":[114],"centers.":[116],"These":[117],"then":[120],"scored":[121],"using":[122,204],"statistical":[124],"measure,":[125],"their":[127],"ability":[128],"distinguish":[130],"proteins":[134,169,203],"background":[137],"set":[138,150],"unrelated":[140],"proteins,":[141,199],"successful":[143,187],"combined":[146],"into":[147],"representative":[149],"family.":[154],"utility":[156],"success":[158],"LFM-Pro":[160],"demonstrated":[162],"on":[163,171],"trypsin-like":[164],"serine":[165],"proteases":[166],"challenging":[173],"classification":[174],"dataset":[175],"via":[176],"comparison":[177],"DALI.":[179],"results":[181],"verify":[182],"our":[184],"both":[188],"identifying":[190],"distinctive":[192],"given":[196],"classifying":[202],"extracted":[206],"AVAILABILITY:":[208],"software":[210],"datasets":[213],"freely":[215],"academic":[218],"research":[219],"use":[220],"at":[221],"http://bioinfo.ceng.metu.edu.tr/Pub/LFMPro.":[222]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
