{"id":"https://openalex.org/W2121852482","doi":"https://doi.org/10.1093/bioinformatics/btl671","title":"BioWeka\u2014extending the Weka framework for bioinformatics","display_name":"BioWeka\u2014extending the Weka framework for bioinformatics","publication_year":2007,"publication_date":"2007-01-19","ids":{"openalex":"https://openalex.org/W2121852482","doi":"https://doi.org/10.1093/bioinformatics/btl671","mag":"2121852482","pmid":"https://pubmed.ncbi.nlm.nih.gov/17237069"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl671","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl671","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/5/651/49829927/bioinformatics_23_5_651.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/5/651/49829927/bioinformatics_23_5_651.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068369157","display_name":"Jan E. Gewehr","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan E. Gewehr","raw_affiliation_strings":["Practical Informatics and Bioinformatics Group, Department of Informatics, Ludwig-Maximilians-University Munich, Amalienstrasse 17, D-80333 Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Practical Informatics and Bioinformatics Group, Department of Informatics, Ludwig-Maximilians-University Munich, Amalienstrasse 17, D-80333 Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005152820","display_name":"Martin Szugat","orcid":null},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Szugat","raw_affiliation_strings":["Practical Informatics and Bioinformatics Group, Department of Informatics, Ludwig-Maximilians-University Munich, Amalienstrasse 17, D-80333 Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Practical Informatics and Bioinformatics Group, Department of Informatics, Ludwig-Maximilians-University Munich, Amalienstrasse 17, D-80333 Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068859428","display_name":"Ralf Zimmer","orcid":"https://orcid.org/0000-0003-1439-2327"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ralf Zimmer","raw_affiliation_strings":["Practical Informatics and Bioinformatics Group, Department of Informatics, Ludwig-Maximilians-University Munich, Amalienstrasse 17, D-80333 Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Practical Informatics and Bioinformatics Group, Department of Informatics, Ludwig-Maximilians-University Munich, Amalienstrasse 17, D-80333 Munich, Germany","institution_ids":["https://openalex.org/I8204097"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I8204097"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2651,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.88058942,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"23","issue":"5","first_page":"651","last_page":"653"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.2531000077724457,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.2531000077724457,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.12610000371932983,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.10760000348091125,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7778108716011047},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.656699538230896},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6437357664108276},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6074721813201904},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6015743613243103},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5890613794326782},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5357683300971985},{"id":"https://openalex.org/keywords/overhead","display_name":"Overhead (engineering)","score":0.4314953088760376},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33514297008514404},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.19786641001701355},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11075878143310547}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7778108716011047},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.656699538230896},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6437357664108276},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6074721813201904},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6015743613243103},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5890613794326782},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5357683300971985},{"id":"https://openalex.org/C2779960059","wikidata":"https://www.wikidata.org/wiki/Q7113681","display_name":"Overhead (engineering)","level":2,"score":0.4314953088760376},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33514297008514404},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.19786641001701355},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11075878143310547}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl671","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl671","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/5/651/49829927/bioinformatics_23_5_651.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17237069","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17237069","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl671","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl671","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/5/651/49829927/bioinformatics_23_5_651.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121852482.pdf","grobid_xml":"https://content.openalex.org/works/W2121852482.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1570448133","https://openalex.org/W2015292449","https://openalex.org/W2022366078","https://openalex.org/W2040703580","https://openalex.org/W2055043387","https://openalex.org/W2076220518","https://openalex.org/W2110041134","https://openalex.org/W2115733831","https://openalex.org/W2133657429","https://openalex.org/W2135893370","https://openalex.org/W2144483796","https://openalex.org/W2158714788","https://openalex.org/W4242716081","https://openalex.org/W4251728543","https://openalex.org/W4255619361"],"related_works":["https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W2002770077","https://openalex.org/W3131163342","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2361728394","https://openalex.org/W2166271660","https://openalex.org/W3089582840","https://openalex.org/W2097747115"],"abstract_inverted_index":{"UNLABELLED:":[0],"Given":[1],"the":[2,53,61,101,113],"growing":[3],"amount":[4],"of":[5,16,103],"biological":[6],"data,":[7],"data":[8,21,32,49,71,105,108,141],"mining":[9,22,50],"methods":[10,74],"have":[11],"become":[12],"an":[13],"integral":[14],"part":[15],"bioinformatics":[17,70,73],"research.":[18],"Unfortunately,":[19],"standard":[20],"tools":[23],"are":[24,151],"often":[25],"not":[26],"sufficiently":[27],"equipped":[28],"for":[29,56,69],"handling":[30],"raw":[31],"such":[33],"as":[34,110,112],"e.g.":[35],"amino":[36],"acid":[37],"sequences.":[38],"One":[39],"popular":[40],"and":[41,72,91,98,140,149],"freely":[42],"available":[43,152],"framework":[44],"that":[45,120],"contains":[46],"many":[47,124],"well-known":[48],"algorithms":[51],"is":[52],"Waikato":[54],"Environment":[55],"Knowledge":[57],"Analysis":[58],"(Weka).":[59],"In":[60],"BioWeka":[62],"project,":[63],"we":[64],"introduce":[65],"various":[66],"input":[67],"formats":[68,109,142],"like":[75],"alignments":[76],"to":[77,82,115,130,143],"Weka.":[78],"This":[79],"allows":[80],"users":[81,129],"easily":[83],"combine":[84],"them":[85],"with":[86,123],"Weka's":[87],"classification,":[88],"clustering,":[89],"validation":[90],"visualization":[92],"facilities":[93],"on":[94],"a":[95],"single":[96],"platform":[97],"therefore":[99],"reduces":[100],"overhead":[102],"converting":[104],"between":[106],"different":[107,125],"well":[111],"need":[114],"write":[116],"custom":[117],"evaluation":[118],"procedures":[119],"can":[121],"deal":[122],"programs.":[126],"We":[127],"encourage":[128],"participate":[131],"in":[132],"this":[133],"project":[134],"by":[135],"adding":[136],"their":[137],"own":[138],"components":[139],"BioWeka.":[144],"AVAILABILITY:":[145],"The":[146],"software,":[147],"documentation":[148],"tutorial":[150],"at":[153],"http://www.bioweka.org.":[154]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
