{"id":"https://openalex.org/W2112200469","doi":"https://doi.org/10.1093/bioinformatics/btl571","title":"SAGA: a subgraph matching tool for biological graphs","display_name":"SAGA: a subgraph matching tool for biological graphs","publication_year":2006,"publication_date":"2006-11-16","ids":{"openalex":"https://openalex.org/W2112200469","doi":"https://doi.org/10.1093/bioinformatics/btl571","mag":"2112200469","pmid":"https://pubmed.ncbi.nlm.nih.gov/17110368"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/2/232/49820321/bioinformatics_23_2_232.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/2/232/49820321/bioinformatics_23_2_232.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090562336","display_name":"Yuanyuan Tian","orcid":"https://orcid.org/0000-0002-6835-8434"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuanyuan Tian","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Michigan 1 \u00a0 1 \u00a0 \u00a0 Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Michigan 1 \u00a0 1 \u00a0 \u00a0 Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066935756","display_name":"Richard C. McEachin","orcid":"https://orcid.org/0000-0001-8026-2913"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard C. McEachin","raw_affiliation_strings":["National Center for Integrative Biomedical Informatics, University of Michigan 2 \u00a0 2 \u00a0 \u00a0 Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Integrative Biomedical Informatics, University of Michigan 2 \u00a0 2 \u00a0 \u00a0 Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048058502","display_name":"Carlos Santos","orcid":"https://orcid.org/0000-0001-9728-8538"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carlos Santos","raw_affiliation_strings":["Department of Human Genetics and Bioinformatics Program, University of Michigan 3 \u00a0 3 \u00a0 \u00a0 Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics and Bioinformatics Program, University of Michigan 3 \u00a0 3 \u00a0 \u00a0 Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111548295","display_name":"David J. States","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David J. States","raw_affiliation_strings":["Department of Human Genetics and Bioinformatics Program, University of Michigan 3 \u00a0 3 \u00a0 \u00a0 Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics and Bioinformatics Program, University of Michigan 3 \u00a0 3 \u00a0 \u00a0 Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069237428","display_name":"Jignesh M. Patel","orcid":"https://orcid.org/0000-0003-3653-2538"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jignesh M. Patel","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Michigan 1 \u00a0 1 \u00a0 \u00a0 Ann Arbor, MI 48109, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Michigan 1 \u00a0 1 \u00a0 \u00a0 Ann Arbor, MI 48109, USA","institution_ids":["https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5069237428"],"corresponding_institution_ids":["https://openalex.org/I27837315"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":10.986,"has_fulltext":true,"cited_by_count":256,"citation_normalized_percentile":{"value":0.98425428,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"23","issue":"2","first_page":"232","last_page":"239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.7985000014305115,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.7985000014305115,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.15520000457763672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.011699999682605267,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7639968991279602},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6296002864837646},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6043587923049927},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5763198137283325},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5213605165481567},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.49270203709602356},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.45777201652526855},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4212932586669922},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.41538766026496887},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2596837282180786},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1350659728050232},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12103497982025146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08473506569862366}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7639968991279602},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6296002864837646},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6043587923049927},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5763198137283325},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5213605165481567},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.49270203709602356},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.45777201652526855},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4212932586669922},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.41538766026496887},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2596837282180786},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1350659728050232},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12103497982025146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08473506569862366},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/2/232/49820321/bioinformatics_23_2_232.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17110368","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17110368","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/2/232/49820321/bioinformatics_23_2_232.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1615948216","display_name":"Integrated Biological Sequence Data Management","funder_award_id":"0543272","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1971677624","display_name":null,"funder_award_id":"U54-DA021519","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2956196429","display_name":null,"funder_award_id":"1-U54-DA021519-01A1","funder_id":"https://openalex.org/F4320337347","funder_display_name":"National Institute on Drug Abuse"},{"id":"https://openalex.org/G5896730874","display_name":null,"funder_award_id":"R01-LM008106","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G6731639883","display_name":null,"funder_award_id":"1-U54-DA021519","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307764","display_name":"Microsoft","ror":"https://ror.org/00d0nc645"},{"id":"https://openalex.org/F4320308158","display_name":"Michigan Economic Development Corporation","ror":"https://ror.org/01y4ah893"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2112200469.pdf","grobid_xml":"https://content.openalex.org/works/W2112200469.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1956559956","https://openalex.org/W1967949450","https://openalex.org/W1985679278","https://openalex.org/W1990313671","https://openalex.org/W1990453950","https://openalex.org/W2032680335","https://openalex.org/W2037036397","https://openalex.org/W2038585541","https://openalex.org/W2050137450","https://openalex.org/W2062815987","https://openalex.org/W2064300563","https://openalex.org/W2065304353","https://openalex.org/W2084619201","https://openalex.org/W2087715585","https://openalex.org/W2099982459","https://openalex.org/W2102913801","https://openalex.org/W2110034858","https://openalex.org/W2116007667","https://openalex.org/W2123733630","https://openalex.org/W2125211684","https://openalex.org/W2127874029","https://openalex.org/W2136316164","https://openalex.org/W2142965177","https://openalex.org/W2147714160","https://openalex.org/W2165674132","https://openalex.org/W2167222948","https://openalex.org/W2167869241","https://openalex.org/W2325227998","https://openalex.org/W4240506724","https://openalex.org/W6662904381","https://openalex.org/W6675110608","https://openalex.org/W6678822023","https://openalex.org/W6678940505","https://openalex.org/W6680870402"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W2101315668","https://openalex.org/W15348386","https://openalex.org/W2314128295","https://openalex.org/W4287026692","https://openalex.org/W1509942269","https://openalex.org/W2770735656","https://openalex.org/W2077895977"],"abstract_inverted_index":{"MOTIVATION:":[0],"With":[1],"the":[2,6,26,181],"rapid":[3],"increase":[4],"in":[5,151],"availability":[7],"of":[8,31,154,168],"biological":[9,122,147],"graph":[10,21,35,43,50,64,72,85,95,113],"datasets,":[11,33,126],"there":[12],"is":[13,165],"a":[14,69,80],"growing":[15],"need":[16],"for":[17,83,89,161],"effective":[18],"and":[19,28,41,94,124,157],"efficient":[20],"querying":[22],"methods.":[23,141,173],"Due":[24],"to":[25,106,120],"noisy":[27],"incomplete":[29],"characteristics":[30],"these":[32],"exact":[34,60,63],"matching":[36,44,51,73],"methods":[37,45,52],"have":[38],"limited":[39],"use":[40],"approximate":[42,71],"are":[46,53,186],"required.":[47],"Unfortunately,":[48],"existing":[49,140,172],"too":[54],"restrictive":[55],"as":[56],"they":[57],"only":[58],"allow":[59],"or":[61],"near":[62],"matching.":[65],"This":[66,77],"paper":[67],"presents":[68],"novel":[70],"technique":[74,78,102],"called":[75],"SAGA.":[76],"employs":[79,99],"flexible":[81],"model":[82],"computing":[84],"similarity,":[86],"which":[87,127],"allows":[88,104],"node":[90,92],"gaps,":[91],"mismatches":[93],"structural":[96],"differences.":[97],"SAGA":[98,116,164,175],"an":[100],"indexing":[101],"that":[103,135],"it":[105],"efficiently":[107],"evaluate":[108],"queries":[109],"even":[110],"against":[111],"large":[112],"datasets.":[114],"RESULTS:":[115],"has":[117,128],"been":[118],"used":[119],"query":[121],"pathways":[123,134],"literature":[125],"revealed":[129],"interesting":[130],"similarities":[131],"between":[132],"distinct":[133],"cannot":[136],"be":[137,177],"found":[138],"by":[139],"These":[142],"matches":[143],"associate":[144],"seemingly":[145],"unrelated":[146],"processes,":[148],"connect":[149],"studies":[150],"different":[152],"sub-areas":[153],"biomedical":[155],"research":[156],"thus":[158],"pose":[159],"hypotheses":[160],"new":[162],"discoveries.":[163],"also":[166,187],"orders":[167],"magnitude":[169],"faster":[170],"than":[171],"AVAILABILITY:":[174],"can":[176],"accessed":[178],"freely":[179,188],"via":[180],"web":[182],"at":[183,190],"http://www.eecs.umich.edu/saga.":[184],"Binaries":[185],"available":[189],"this":[191],"website.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":22},{"year":2012,"cited_by_count":16}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
