{"id":"https://openalex.org/W2147298104","doi":"https://doi.org/10.1093/bioinformatics/btl536","title":"SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays","display_name":"SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays","publication_year":2006,"publication_date":"2006-10-24","ids":{"openalex":"https://openalex.org/W2147298104","doi":"https://doi.org/10.1093/bioinformatics/btl536","mag":"2147298104","pmid":"https://pubmed.ncbi.nlm.nih.gov/17062589"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl536","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/1/57/49816279/bioinformatics_23_1_57.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/23/1/57/49816279/bioinformatics_23_1_57.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100559028","display_name":"Jianping Hua","orcid":null},"institutions":[{"id":"https://openalex.org/I176279760","display_name":"University of Phoenix","ror":"https://ror.org/01j0n2h15","country_code":"US","type":"education","lineage":["https://openalex.org/I176279760"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianping Hua","raw_affiliation_strings":["Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I176279760"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074460206","display_name":"David W. Craig","orcid":"https://orcid.org/0000-0003-2040-1955"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I4210104856","display_name":"Phoenix (United States)","ror":"https://ror.org/01ggenr10","country_code":"US","type":"company","lineage":["https://openalex.org/I4210104856"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David W. Craig","raw_affiliation_strings":["Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I4210104856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035752484","display_name":"Marcel Brun","orcid":"https://orcid.org/0000-0002-6452-5856"},"institutions":[{"id":"https://openalex.org/I176279760","display_name":"University of Phoenix","ror":"https://ror.org/01j0n2h15","country_code":"US","type":"education","lineage":["https://openalex.org/I176279760"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcel Brun","raw_affiliation_strings":["Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I176279760"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103171587","display_name":"Jennifer Webster","orcid":"https://orcid.org/0009-0006-6641-1234"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I4210104856","display_name":"Phoenix (United States)","ror":"https://ror.org/01ggenr10","country_code":"US","type":"company","lineage":["https://openalex.org/I4210104856"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer Webster","raw_affiliation_strings":["Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I4210104856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000330909","display_name":"Victoria Zismann","orcid":"https://orcid.org/0000-0003-3287-5779"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I4210104856","display_name":"Phoenix (United States)","ror":"https://ror.org/01ggenr10","country_code":"US","type":"company","lineage":["https://openalex.org/I4210104856"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victoria Zismann","raw_affiliation_strings":["Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I4210104856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034828812","display_name":"Waibhav Tembe","orcid":null},"institutions":[{"id":"https://openalex.org/I176279760","display_name":"University of Phoenix","ror":"https://ror.org/01j0n2h15","country_code":"US","type":"education","lineage":["https://openalex.org/I176279760"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Waibhav Tembe","raw_affiliation_strings":["Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I176279760"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078005709","display_name":"Keta Joshipura","orcid":null},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I4210104856","display_name":"Phoenix (United States)","ror":"https://ror.org/01ggenr10","country_code":"US","type":"company","lineage":["https://openalex.org/I4210104856"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keta Joshipura","raw_affiliation_strings":["Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I4210104856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037628555","display_name":"Matthew J. Huentelman","orcid":"https://orcid.org/0000-0001-7390-9918"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I4210104856","display_name":"Phoenix (United States)","ror":"https://ror.org/01ggenr10","country_code":"US","type":"company","lineage":["https://openalex.org/I4210104856"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew J. Huentelman","raw_affiliation_strings":["Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I4210104856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112221423","display_name":"Edward R. Dougherty","orcid":null},"institutions":[{"id":"https://openalex.org/I176279760","display_name":"University of Phoenix","ror":"https://ror.org/01j0n2h15","country_code":"US","type":"education","lineage":["https://openalex.org/I176279760"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward R. Dougherty","raw_affiliation_strings":["Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","Department of Electrical and Computer Engineering, Texas A&M University 3 \u00a0 3 \u00a0 \u00a0 College Station, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Division 1 \u00a0 1 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I176279760"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University 3 \u00a0 3 \u00a0 \u00a0 College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103087918","display_name":"Dietrich A. Stephan","orcid":"https://orcid.org/0000-0002-5128-7078"},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I4210104856","display_name":"Phoenix (United States)","ror":"https://ror.org/01ggenr10","country_code":"US","type":"company","lineage":["https://openalex.org/I4210104856"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dietrich A. Stephan","raw_affiliation_strings":["Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurogenomics Division, Translational Genomics Research Institute 2 \u00a0 2 \u00a0 \u00a0 Phoenix, 445 N 5th Street, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I4210104856"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5103087918"],"corresponding_institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I4210104856"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.4585,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.96120598,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"23","issue":"1","first_page":"57","last_page":"63"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9544000029563904,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9544000029563904,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.010200000368058681,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.009100000374019146,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.6979035139083862},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.6872500777244568},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.5835526585578918},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.5430185198783875},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5067489743232727},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.4910757541656494},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4572053551673889},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3753260672092438},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3589971363544464},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34481436014175415},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3354601263999939},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08353936672210693}],"concepts":[{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.6979035139083862},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.6872500777244568},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.5835526585578918},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.5430185198783875},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5067489743232727},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.4910757541656494},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4572053551673889},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3753260672092438},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3589971363544464},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34481436014175415},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3354601263999939},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08353936672210693},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005189","descriptor_name":"False Positive Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044465","descriptor_name":"White People","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D044465","descriptor_name":"White People","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D044465","descriptor_name":"White People","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl536","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/1/57/49816279/bioinformatics_23_1_57.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17062589","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17062589","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl536","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl536","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/23/1/57/49816279/bioinformatics_23_1_57.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"No poverty","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/1"}],"awards":[{"id":"https://openalex.org/G6293803673","display_name":null,"funder_award_id":"U24 NS051872","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G7078155681","display_name":null,"funder_award_id":"U01-HL086528-01","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147298104.pdf","grobid_xml":"https://content.openalex.org/works/W2147298104.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1649244449","https://openalex.org/W1958158305","https://openalex.org/W1975120776","https://openalex.org/W1987971958","https://openalex.org/W1993507262","https://openalex.org/W2047555270","https://openalex.org/W2065571888","https://openalex.org/W2081872599","https://openalex.org/W2101510083","https://openalex.org/W2113784410","https://openalex.org/W2120321361","https://openalex.org/W2125255775","https://openalex.org/W2217809488"],"related_works":["https://openalex.org/W2377518790","https://openalex.org/W2394359576","https://openalex.org/W2463477745","https://openalex.org/W2349105149","https://openalex.org/W2164855536","https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W2070581548","https://openalex.org/W3016573916","https://openalex.org/W4281711902"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,72,87],"technology":[2],"to":[3,39,120,131,142,164],"genotype":[4,55,64,121],"single":[5],"nucleotide":[6],"polymorphisms":[7,20],"(SNPs)":[8],"at":[9,205],"extremely":[10],"high":[11],"densities":[12],"provides":[13],"for":[14,18,61,91,95,105,176,191,198],"hypothesis-free":[15],"genome-wide":[16],"scans":[17],"common":[19],"associated":[21],"with":[22,79],"complex":[23,199],"disease.":[24],"However,":[25],"we":[26,99],"find":[27],"that":[28,110],"some":[29,182],"errors":[30],"introduced":[31],"by":[32],"commonly":[33],"employed":[34],"genotyping":[35,94,156],"algorithms":[36,150],"may":[37,152],"lead":[38],"inflation":[40,159],"of":[41,68,70,160,173,194],"false":[42,161,183,187],"associations":[43],"between":[44],"markers":[45],"and":[46,137,140,170,186],"phenotype.":[47],"RESULTS:":[48],"We":[49],"have":[50],"developed":[51],"a":[52,83,101,117],"novel":[53],"SNP":[54,174],"calling":[56,65,126],"program,":[57],"SNiPer-High":[58],"Density":[59],"(SNiPer-HD),":[60],"highly":[62,92,154],"accurate":[63,93,155,171],"across":[66],"hundreds":[67],"thousands":[69],"SNPs.":[71,97,167],"program":[73],"employs":[74],"an":[75],"expectation-maximization":[76],"(EM)":[77],"algorithm":[78,88,136],"parameters":[80],"based":[81],"on":[82],"training":[84],"sample":[85],"set.":[86],"choice":[89],"allows":[90],"most":[96],"Also,":[98],"introduce":[100],"quality":[102],"control":[103],"metric":[104,118],"each":[106],"assayed":[107],"SNP,":[108],"such":[109,145],"poor-behaving":[111],"SNPs":[112],"can":[113],"be":[114],"filtered":[115],"using":[116],"correlating":[119],"class":[122],"separation":[123],"in":[124],"the":[125,132],"algorithm.":[127],"SNiPer-HD":[128,202],"is":[129,138,203],"superior":[130],"standard":[133],"dynamic":[134],"modeling":[135],"complementary":[139],"non-redundant":[141],"other":[143],"algorithms,":[144],"as":[146],"BRLMM.":[147],"Implementing":[148],"multiple":[149],"together":[151],"provide":[153],"calls,":[157],"without":[158],"positives":[162],"due":[163],"systematically":[165],"miss-called":[166],"A":[168],"reliable":[169],"set":[172],"genotypes":[175],"increasingly":[177],"dense":[178],"panels":[179],"will":[180],"eliminate":[181],"association":[184],"signals":[185],"negative":[188],"signals,":[189],"allowing":[190],"rapid":[192],"identification":[193],"disease":[195],"susceptibility":[196],"loci":[197],"traits.":[200],"AVAILABILITY:":[201],"available":[204],"TGen's":[206],"website:":[207],"http://www.tgen.org/neurogenomics/data.":[208]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
