{"id":"https://openalex.org/W2121025106","doi":"https://doi.org/10.1093/bioinformatics/btl471","title":"SPEED: a molecular-evolution-based database of mammalian orthologous groups","display_name":"SPEED: a molecular-evolution-based database of mammalian orthologous groups","publication_year":2006,"publication_date":"2006-09-11","ids":{"openalex":"https://openalex.org/W2121025106","doi":"https://doi.org/10.1093/bioinformatics/btl471","mag":"2121025106","pmid":"https://pubmed.ncbi.nlm.nih.gov/16966361"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl471","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl471","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011892373","display_name":"Eric J. Vallender","orcid":"https://orcid.org/0000-0003-3506-0540"},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric J. Vallender","raw_affiliation_strings":["Department of Human Genetics and Committee on Genetics, Howard Hughes Medical Institute, University of Chicago 1 \u00a0 1 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics and Committee on Genetics, Howard Hughes Medical Institute, University of Chicago 1 \u00a0 1 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022629447","display_name":"Justin Paschall","orcid":null},"institutions":[{"id":"https://openalex.org/I75421653","display_name":"University of Missouri\u2013Kansas City","ror":"https://ror.org/01w0d5g70","country_code":"US","type":"education","lineage":["https://openalex.org/I75421653"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin E. Paschall","raw_affiliation_strings":["Division of Molecular Biology and Biochemistry, University of Missouri-Kansas City 2 \u00a0 2 \u00a0 \u00a0 5007 Rockhill Road, Kansas City, MO 64110, USA"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Biology and Biochemistry, University of Missouri-Kansas City 2 \u00a0 2 \u00a0 \u00a0 5007 Rockhill Road, Kansas City, MO 64110, USA","institution_ids":["https://openalex.org/I75421653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068717069","display_name":"Christine M. Malcom","orcid":null},"institutions":[{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christine M. Malcom","raw_affiliation_strings":["Department of Anthropology, University of Chicago 3 \u00a0 3 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA","Department of Human Genetics and Committee on Genetics, Howard Hughes Medical Institute, University of Chicago 1 \u00a0 1 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Department of Anthropology, University of Chicago 3 \u00a0 3 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Department of Human Genetics and Committee on Genetics, Howard Hughes Medical Institute, University of Chicago 1 \u00a0 1 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081946675","display_name":"Bruce T. Lahn","orcid":"https://orcid.org/0000-0002-6145-2217"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruce T. Lahn","raw_affiliation_strings":["Department of Human Genetics and Committee on Genetics, Howard Hughes Medical Institute, University of Chicago 1 \u00a0 1 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics and Committee on Genetics, Howard Hughes Medical Institute, University of Chicago 1 \u00a0 1 \u00a0 \u00a0 920 East 58th Street, Chicago, IL 60637, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I40347166"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072779805","display_name":"Gerald J. Wyckoff","orcid":"https://orcid.org/0000-0003-2604-2666"},"institutions":[{"id":"https://openalex.org/I75421653","display_name":"University of Missouri\u2013Kansas City","ror":"https://ror.org/01w0d5g70","country_code":"US","type":"education","lineage":["https://openalex.org/I75421653"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gerald J. Wyckoff","raw_affiliation_strings":["Division of Molecular Biology and Biochemistry, University of Missouri-Kansas City 2 \u00a0 2 \u00a0 \u00a0 5007 Rockhill Road, Kansas City, MO 64110, USA"],"affiliations":[{"raw_affiliation_string":"Division of Molecular Biology and Biochemistry, University of Missouri-Kansas City 2 \u00a0 2 \u00a0 \u00a0 5007 Rockhill Road, Kansas City, MO 64110, USA","institution_ids":["https://openalex.org/I75421653"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5072779805"],"corresponding_institution_ids":["https://openalex.org/I75421653"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3974,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.61278102,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"22","issue":"22","first_page":"2835","last_page":"2837"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5607293248176575},{"id":"https://openalex.org/keywords/multidisciplinary-approach","display_name":"Multidisciplinary approach","score":0.5209002494812012},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5038742423057556},{"id":"https://openalex.org/keywords/outgroup","display_name":"Outgroup","score":0.4891984462738037},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4832380712032318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46209731698036194},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.45854049921035767},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4250166714191437},{"id":"https://openalex.org/keywords/data-exploration","display_name":"Data exploration","score":0.4142836332321167},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37065842747688293},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.34155356884002686},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.265436589717865},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24301224946975708},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.12727120518684387}],"concepts":[{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5607293248176575},{"id":"https://openalex.org/C22467394","wikidata":"https://www.wikidata.org/wiki/Q849359","display_name":"Multidisciplinary approach","level":2,"score":0.5209002494812012},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5038742423057556},{"id":"https://openalex.org/C51271553","wikidata":"https://www.wikidata.org/wiki/Q842917","display_name":"Outgroup","level":2,"score":0.4891984462738037},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4832380712032318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46209731698036194},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.45854049921035767},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4250166714191437},{"id":"https://openalex.org/C2780977526","wikidata":"https://www.wikidata.org/wiki/Q42417149","display_name":"Data exploration","level":3,"score":0.4142836332321167},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37065842747688293},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.34155356884002686},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.265436589717865},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24301224946975708},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.12727120518684387},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl471","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl471","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16966361","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16966361","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1529015533","https://openalex.org/W1689369637","https://openalex.org/W1972673599","https://openalex.org/W1987378985","https://openalex.org/W1987510089","https://openalex.org/W1990453950","https://openalex.org/W1995169648","https://openalex.org/W2022979449","https://openalex.org/W2064423237","https://openalex.org/W2094400007","https://openalex.org/W2095724872","https://openalex.org/W2096525273","https://openalex.org/W2097040991","https://openalex.org/W2099016813","https://openalex.org/W2100050680","https://openalex.org/W2100890434","https://openalex.org/W2114049512","https://openalex.org/W2114611642","https://openalex.org/W2117790117","https://openalex.org/W2127230663","https://openalex.org/W2151464048","https://openalex.org/W2155606054","https://openalex.org/W2163490748","https://openalex.org/W2165674132","https://openalex.org/W2168909179","https://openalex.org/W4210580032","https://openalex.org/W4236324471"],"related_works":["https://openalex.org/W2036711378","https://openalex.org/W2171277769","https://openalex.org/W2030640333","https://openalex.org/W3164573509","https://openalex.org/W2599768688","https://openalex.org/W1872127137","https://openalex.org/W1603543036","https://openalex.org/W2131211314","https://openalex.org/W142583359","https://openalex.org/W2169501356"],"abstract_inverted_index":{"See":[0],"http://bioinfobase.umkc.edu/speed/":[1],"for":[2],"access.":[3]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
