{"id":"https://openalex.org/W2164011292","doi":"https://doi.org/10.1093/bioinformatics/btl444","title":"SEBINI: Software Environment for BIological Network Inference","display_name":"SEBINI: Software Environment for BIological Network Inference","publication_year":2006,"publication_date":"2006-09-05","ids":{"openalex":"https://openalex.org/W2164011292","doi":"https://doi.org/10.1093/bioinformatics/btl444","mag":"2164011292","pmid":"https://pubmed.ncbi.nlm.nih.gov/16954144"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl444","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/21/2706/48838036/bioinformatics_22_21_2706.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/21/2706/48838036/bioinformatics_22_21_2706.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042537115","display_name":"Ronald C. Taylor","orcid":"https://orcid.org/0000-0001-9777-9767"},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ronald C. Taylor","raw_affiliation_strings":["Computational Biology and Bioinformatics Group, Pacific Northwest National Laboratory 1 \u00a0 1 \u00a0 \u00a0 Richland, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Bioinformatics Group, Pacific Northwest National Laboratory 1 \u00a0 1 \u00a0 \u00a0 Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113935679","display_name":"Anuj Shah","orcid":null},"institutions":[{"id":"https://openalex.org/I142606810","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307","country_code":"US","type":"facility","lineage":["https://openalex.org/I1325736334","https://openalex.org/I1330989302","https://openalex.org/I142606810","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anuj Shah","raw_affiliation_strings":["Computational Biology and Bioinformatics Group, Pacific Northwest National Laboratory 1 \u00a0 1 \u00a0 \u00a0 Richland, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Bioinformatics Group, Pacific Northwest National Laboratory 1 \u00a0 1 \u00a0 \u00a0 Richland, WA, USA","institution_ids":["https://openalex.org/I142606810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059802957","display_name":"Charles Treatman","orcid":null},"institutions":[{"id":"https://openalex.org/I70571728","display_name":"Oberlin College","ror":"https://ror.org/05ac26z88","country_code":"US","type":"education","lineage":["https://openalex.org/I70571728"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Treatman","raw_affiliation_strings":["Oberlin College, Oberlin 2 \u00a0 2 \u00a0 \u00a0 OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oberlin College, Oberlin 2 \u00a0 2 \u00a0 \u00a0 OH, USA","institution_ids":["https://openalex.org/I70571728"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085744275","display_name":"Meridith Blevins","orcid":"https://orcid.org/0000-0002-3861-9859"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meridith Blevins","raw_affiliation_strings":["Case Western Reserve University, Cleveland 3 \u00a0 3 \u00a0 \u00a0 OH, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Case Western Reserve University, Cleveland 3 \u00a0 3 \u00a0 \u00a0 OH, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042537115"],"corresponding_institution_ids":["https://openalex.org/I142606810"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.5263,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.81278304,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"22","issue":"21","first_page":"2706","last_page":"2708"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8213435411453247},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.8130652904510498},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6565247178077698},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.596193253993988},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5751604437828064},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5628735423088074},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5586999654769897},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.535071611404419},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5155479907989502},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4852900207042694},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.44328173995018005},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4247332811355591},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.382260799407959},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.2802203297615051},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1998688280582428},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15582621097564697}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8213435411453247},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.8130652904510498},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6565247178077698},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.596193253993988},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5751604437828064},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5628735423088074},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5586999654769897},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.535071611404419},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5155479907989502},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4852900207042694},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.44328173995018005},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4247332811355591},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.382260799407959},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.2802203297615051},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1998688280582428},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15582621097564697},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl444","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/21/2706/48838036/bioinformatics_22_21_2706.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16954144","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16954144","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl444","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl444","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/21/2706/48838036/bioinformatics_22_21_2706.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G125460123","display_name":null,"funder_award_id":"DE-AC05\u201376RL01830","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G138090931","display_name":null,"funder_award_id":"DEAC0576RL01830","funder_id":"https://openalex.org/F4320338354","funder_display_name":"Pacific Northwest National Laboratory"},{"id":"https://openalex.org/G1899721271","display_name":null,"funder_award_id":"AC05-76RL01830","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G2506945562","display_name":null,"funder_award_id":"76RL01830","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2510423872","display_name":null,"funder_award_id":"AC05-76RL01830","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2988778103","display_name":null,"funder_award_id":"DE-AC05?","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G391136020","display_name":null,"funder_award_id":"DE- AC05-76RL01830","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"},{"id":"https://openalex.org/G5321382714","display_name":null,"funder_award_id":"76RL01830","funder_id":"https://openalex.org/F4320338354","funder_display_name":"Pacific Northwest National Laboratory"},{"id":"https://openalex.org/G5726405315","display_name":null,"funder_award_id":"DE-AC05","funder_id":"https://openalex.org/F4320306250","funder_display_name":"Battelle"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306250","display_name":"Battelle","ror":"https://ror.org/01h5tnr73"},{"id":"https://openalex.org/F4320338354","display_name":"Pacific Northwest National Laboratory","ror":"https://ror.org/05h992307"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2164011292.pdf","grobid_xml":"https://content.openalex.org/works/W2164011292.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1971266246","https://openalex.org/W2073307618","https://openalex.org/W2120034091","https://openalex.org/W2137474062","https://openalex.org/W2141420005","https://openalex.org/W2151794037","https://openalex.org/W2159675211","https://openalex.org/W2163296115","https://openalex.org/W2166667584","https://openalex.org/W3099289621","https://openalex.org/W6642949454"],"related_works":["https://openalex.org/W1516095885","https://openalex.org/W4231704780","https://openalex.org/W2158573927","https://openalex.org/W2108921801","https://openalex.org/W1981336497","https://openalex.org/W4206079007","https://openalex.org/W2398058485","https://openalex.org/W254965819","https://openalex.org/W3156231268","https://openalex.org/W4205365843"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,126],"Software":[2],"Environment":[3],"for":[4,17,137],"BIological":[5],"Network":[6],"Inference":[7],"(SEBINI)":[8],"has":[9],"been":[10],"created":[11],"to":[12,25,39,81,85,94],"provide":[13],"an":[14],"interactive":[15],"environment":[16],"the":[18,27,58,61,70],"deployment":[19],"and":[20,32,41,49,93,130],"evaluation":[21],"of":[22,29,64,72,109],"algorithms":[23],"used":[24,38],"reconstruct":[26],"structure":[28],"biological":[30,110],"regulatory":[31],"interaction":[33],"networks.":[34],"SEBINI":[35,77,99],"can":[36],"be":[37,79],"compare":[40],"train":[42],"network":[43],"inference":[44,74,91],"methods":[45],"on":[46],"artificial":[47],"networks":[48],"simulated":[50],"gene":[51],"expression":[52,67],"perturbation":[53],"data.":[54,98],"It":[55],"also":[56],"allows":[57],"analysis":[59],"within":[60],"same":[62],"framework":[63],"experimental":[65,97],"high-throughput":[66],"data":[68],"using":[69],"suite":[71],"(trained)":[73],"methods;":[75],"hence":[76],"should":[78],"useful":[80],"software":[82],"developers":[83],"wishing":[84],"evaluate,":[86],"compare,":[87],"refine":[88],"or":[89],"combine":[90],"techniques,":[92],"bioinformaticians":[95],"analyzing":[96],"provides":[100],"a":[101],"platform":[102],"that":[103],"aids":[104],"in":[105,115],"more":[106],"accurate":[107],"reconstruction":[108],"networks,":[111],"with":[112],"less":[113,116],"effort,":[114],"time.":[117],"AVAILABILITY:":[118],"A":[119],"demonstration":[120],"website":[121],"is":[122],"located":[123],"at":[124],"https://www.emsl.pnl.gov/NIT/NIT.html.":[125],"Java":[127],"source":[128],"code":[129],"PostgreSQL":[131],"database":[132],"schema":[133],"are":[134],"available":[135],"freely":[136],"non-commercial":[138],"use.":[139]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2016-06-24T00:00:00"}
