{"id":"https://openalex.org/W2126320151","doi":"https://doi.org/10.1093/bioinformatics/btl410","title":"IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics","display_name":"IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics","publication_year":2006,"publication_date":"2006-08-31","ids":{"openalex":"https://openalex.org/W2126320151","doi":"https://doi.org/10.1093/bioinformatics/btl410","mag":"2126320151","pmid":"https://pubmed.ncbi.nlm.nih.gov/16945944"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl410","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl410","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/20/2572/579639/btl410.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"paratext","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/20/2572/579639/btl410.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101882730","display_name":"Dequan Li","orcid":"https://orcid.org/0000-0003-0229-5159"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dequan Li","raw_affiliation_strings":["Graduate University of Chinese Academy of Sciences 2 \u00a0 2 \u00a0 \u00a0 Beijing 100039, China","Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences 2 \u00a0 2 \u00a0 \u00a0 Beijing 100039, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018478553","display_name":"Wen Gao","orcid":"https://orcid.org/0000-0002-8070-802X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen Gao","raw_affiliation_strings":["Graduate University of Chinese Academy of Sciences 2 \u00a0 2 \u00a0 \u00a0 Beijing 100039, China","Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences 2 \u00a0 2 \u00a0 \u00a0 Beijing 100039, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027158588","display_name":"Charles X. Ling","orcid":"https://orcid.org/0000-0003-3797-1348"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Charles X. Ling","raw_affiliation_strings":["Department of Computer Science, The University of Western Ontario 3 \u00a0 3 \u00a0 \u00a0 Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Western Ontario 3 \u00a0 3 \u00a0 \u00a0 Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011162468","display_name":"Xiaobiao Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaobiao Wang","raw_affiliation_strings":["Graduate University of Chinese Academy of Sciences 2 \u00a0 2 \u00a0 \u00a0 Beijing 100039, China","Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate University of Chinese Academy of Sciences 2 \u00a0 2 \u00a0 \u00a0 Beijing 100039, China","institution_ids":["https://openalex.org/I4210165038"]},{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110199068","display_name":"Rui-Xiang Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruixiang Sun","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100695089","display_name":"Si\u2010Min He","orcid":"https://orcid.org/0000-0002-2434-7194"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210090176","display_name":"Institute of Computing Technology","ror":"https://ror.org/0090r4d87","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Simin He","raw_affiliation_strings":["Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computing Technology, Chinese Academy of Sciences 1 \u00a0 1 \u00a0 \u00a0 Beijing 100080, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101882730"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210090176","https://openalex.org/I4210165038"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"20","first_page":"2572","last_page":"2573"},"is_retracted":false,"is_paratext":true,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.46219998598098755,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.46219998598098755,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.27250000834465027,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1062999963760376,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8198583126068115},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7746613025665283},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.701556921005249},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.6400843858718872},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5954491496086121},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5711549520492554},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.548907995223999},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5476672649383545},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5389114022254944},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5313591957092285},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5037307143211365},{"id":"https://openalex.org/keywords/database-index","display_name":"Database index","score":0.4470304846763611},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.429510235786438},{"id":"https://openalex.org/keywords/database-search-engine","display_name":"Database search engine","score":0.4171096384525299},{"id":"https://openalex.org/keywords/index","display_name":"Index (typography)","score":0.41567230224609375},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33644986152648926},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.3249738812446594},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22092542052268982},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.19300904870033264}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8198583126068115},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7746613025665283},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.701556921005249},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.6400843858718872},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5954491496086121},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5711549520492554},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.548907995223999},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5476672649383545},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5389114022254944},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5313591957092285},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5037307143211365},{"id":"https://openalex.org/C59276292","wikidata":"https://www.wikidata.org/wiki/Q580427","display_name":"Database index","level":3,"score":0.4470304846763611},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.429510235786438},{"id":"https://openalex.org/C48000682","wikidata":"https://www.wikidata.org/wiki/Q5227411","display_name":"Database search engine","level":3,"score":0.4171096384525299},{"id":"https://openalex.org/C2777382242","wikidata":"https://www.wikidata.org/wiki/Q6017816","display_name":"Index (typography)","level":2,"score":0.41567230224609375},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33644986152648926},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.3249738812446594},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22092542052268982},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.19300904870033264},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl410","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl410","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/20/2572/579639/btl410.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16945944","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16945944","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl410","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl410","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/20/2572/579639/btl410.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2023096047","https://openalex.org/W2051795211","https://openalex.org/W2074197587","https://openalex.org/W2127325419","https://openalex.org/W2130706354","https://openalex.org/W2166041923"],"related_works":["https://openalex.org/W2013194361","https://openalex.org/W2562353568","https://openalex.org/W189850294","https://openalex.org/W2031764625","https://openalex.org/W4300002975","https://openalex.org/W4315702991","https://openalex.org/W1993934436","https://openalex.org/W2911264380","https://openalex.org/W2958694735","https://openalex.org/W3004571255"],"abstract_inverted_index":{"UNLABELLED:":[0],"A":[1],"software":[2],"package,":[3],"IndexToolkit,":[4],"aimed":[5],"at":[6],"overcoming":[7],"the":[8,107,117,125,131],"disadvantage":[9],"of":[10,44,96],"FASTA-format":[11],"databases":[12],"for":[13,61,139],"frequent":[14],"searching,":[15],"is":[16,58,89,102,143],"developed":[17],"to":[18,23,38,75,80,91,104],"utilize":[19],"an":[20,33],"indexing":[21],"strategy":[22],"substantially":[24],"accelerate":[25],"sequence":[26,46],"queries.":[27],"IndexToolkit":[28,74,88,101],"includes":[29],"user-friendly":[30],"tools":[31],"and":[32,42,116,137,141],"Application":[34],"Programming":[35],"Interface":[36],"(API)":[37],"facilitate":[39],"indexing,":[40],"storage":[41],"retrieval":[43],"protein":[45,97],"databases.":[47],"As":[48],"open":[49,108],"source,":[50],"it":[51],"provides":[52],"a":[53],"sequence-retrieval":[54],"developing":[55],"framework,":[56],"which":[57],"easily":[59],"extensible":[60],"high-speed-request":[62],"proteomic":[63],"applications,":[64],"such":[65],"as":[66],"database":[67,76],"searching":[68,77],"or":[69],"modification":[70],"discovering.":[71],"We":[72],"applied":[73],"engine":[78],"pFind":[79],"demonstrate":[81],"its":[82],"effect.":[83],"Experimental":[84],"studies":[85],"show":[86],"that":[87],"able":[90],"support":[92],"significantly":[93],"faster":[94],"searches":[95],"database.":[98],"AVAILABILITY:":[99],"The":[100,113],"free":[103],"use":[105],"under":[106],"source":[109,114],"GNU":[110],"GPL":[111],"license.":[112],"code":[115],"compiled":[118],"binary":[119],"can":[120],"be":[121],"freely":[122],"accessed":[123],"through":[124],"website":[126],"http://pfind.jdl.ac.cn/IndexToolkit.":[127],"In":[128],"this":[129],"website,":[130],"more":[132],"detailed":[133],"information":[134],"including":[135],"screenshots":[136],"documentations":[138],"users":[140],"developers":[142],"also":[144],"available.":[145]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
