{"id":"https://openalex.org/W2116063068","doi":"https://doi.org/10.1093/bioinformatics/btl379","title":"General framework for developing and evaluating database scoring algorithms using the TANDEM search engine","display_name":"General framework for developing and evaluating database scoring algorithms using the TANDEM search engine","publication_year":2006,"publication_date":"2006-07-28","ids":{"openalex":"https://openalex.org/W2116063068","doi":"https://doi.org/10.1093/bioinformatics/btl379","mag":"2116063068","pmid":"https://pubmed.ncbi.nlm.nih.gov/16877754"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl379","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2830/48840312/bioinformatics_22_22_2830.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2830/48840312/bioinformatics_22_22_2830.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031754851","display_name":"Brendan MacLean","orcid":"https://orcid.org/0000-0002-9575-0255"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brendan MacLean","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center 1 \u00a0 1 \u00a0 \u00a0 Seattle, USA","LabKey Software, LLC 2 \u00a0 2 \u00a0 \u00a0 Seattle, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center 1 \u00a0 1 \u00a0 \u00a0 Seattle, USA","institution_ids":["https://openalex.org/I4210089486"]},{"raw_affiliation_string":"LabKey Software, LLC 2 \u00a0 2 \u00a0 \u00a0 Seattle, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011565192","display_name":"Jimmy K. Eng","orcid":"https://orcid.org/0000-0001-6352-6737"},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jimmy K. Eng","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center 1 \u00a0 1 \u00a0 \u00a0 Seattle, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center 1 \u00a0 1 \u00a0 \u00a0 Seattle, USA","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057692877","display_name":"Ronald C. Beavis","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ronald C. Beavis","raw_affiliation_strings":["Beavis Informatics Ltd 3 \u00a0 3 \u00a0 \u00a0 Winnipeg, Canada","University of British Columbia 4 \u00a0 4 \u00a0 \u00a0 Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beavis Informatics Ltd 3 \u00a0 3 \u00a0 \u00a0 Winnipeg, Canada","institution_ids":[]},{"raw_affiliation_string":"University of British Columbia 4 \u00a0 4 \u00a0 \u00a0 Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109208118","display_name":"Martin McIntosh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Martin McIntosh","raw_affiliation_strings":["Fred Hutchinson Cancer Research Center 1 \u00a0 1 \u00a0 \u00a0 Seattle, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fred Hutchinson Cancer Research Center 1 \u00a0 1 \u00a0 \u00a0 Seattle, USA","institution_ids":["https://openalex.org/I4210089486"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5109208118"],"corresponding_institution_ids":["https://openalex.org/I4210089486"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.5098,"has_fulltext":true,"cited_by_count":218,"citation_normalized_percentile":{"value":0.98484466,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"22","issue":"22","first_page":"2830","last_page":"2832"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.004699999932199717,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7791681289672852},{"id":"https://openalex.org/keywords/database-search-engine","display_name":"Database search engine","score":0.6372007727622986},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5265306234359741},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48953303694725037},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4804617762565613},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.47363653779029846},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45321837067604065},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.44875040650367737},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.44239652156829834},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4344451427459717},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4148951470851898},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.40200233459472656},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1847679316997528},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09401306509971619}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7791681289672852},{"id":"https://openalex.org/C48000682","wikidata":"https://www.wikidata.org/wiki/Q5227411","display_name":"Database search engine","level":3,"score":0.6372007727622986},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5265306234359741},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48953303694725037},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4804617762565613},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.47363653779029846},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45321837067604065},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.44875040650367737},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.44239652156829834},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4344451427459717},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4148951470851898},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.40200233459472656},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1847679316997528},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09401306509971619},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl379","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2830/48840312/bioinformatics_22_22_2830.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16877754","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16877754","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl379","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl379","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2830/48840312/bioinformatics_22_22_2830.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1871988410","display_name":null,"funder_award_id":"23XS144A","funder_id":"https://openalex.org/F4320332505","funder_display_name":"U.S. Public Health Service"}],"funders":[{"id":"https://openalex.org/F4320332505","display_name":"U.S. Public Health Service","ror":"https://ror.org/05xf94514"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116063068.pdf","grobid_xml":"https://content.openalex.org/works/W2116063068.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1604959358","https://openalex.org/W1868943464","https://openalex.org/W2047275456","https://openalex.org/W2093620473","https://openalex.org/W2096721473","https://openalex.org/W2112078820","https://openalex.org/W2130706354","https://openalex.org/W2132899146","https://openalex.org/W2154139219"],"related_works":["https://openalex.org/W3005935371","https://openalex.org/W2113128227","https://openalex.org/W632256878","https://openalex.org/W4211197663","https://openalex.org/W2491403535","https://openalex.org/W3123068371","https://openalex.org/W2479811461","https://openalex.org/W2348885786","https://openalex.org/W2104915799","https://openalex.org/W4311938462"],"abstract_inverted_index":{"MOTIVATION:":[0],"Tandem":[1],"mass":[2],"spectrometry":[3],"(MS/MS)":[4],"identifies":[5],"protein":[6,30],"sequences":[7],"using":[8],"database":[9,42,62,203],"search":[10,43,111,190],"engines,":[11],"at":[12,94],"the":[13,22,46,67,74,79,86,116,119,160,199,210,224],"core":[14,88],"of":[15,118,127,171,198,202,213],"which":[16,195],"is":[17,92,185,227],"a":[18,29,39,54,109],"score":[19],"that":[20,147],"measures":[21],"similarity":[23],"between":[24],"peptide":[25,179],"MS/MS":[26,176],"spectra":[27,177],"and":[28,77,106,123,141,164,169,193,209],"sequence":[31],"database.":[32],"The":[33,181,206],"TANDEM":[34,52,81,129,162],"application":[35,89],"was":[36],"developed":[37],"as":[38,53],"freely":[40],"available":[41,102,228],"engine":[44,112],"for":[45,56,174,223],"proteomics":[47],"research":[48,58,167],"community.":[49],"To":[50],"extend":[51],"platform":[55],"further":[57],"on":[59,159],"developing":[60],"improved":[61],"scoring":[63,75,82,99,121,131,136,145,183,225],"methods,":[64],"we":[65],"modified":[66],"software":[68],"to":[69,72,103,152,178],"allow":[70],"users":[71],"redefine":[73],"function":[76,83,137,146],"replace":[78],"native":[80],"while":[84],"leaving":[85],"remaining":[87],"intact.":[90],"Redefinition":[91],"performed":[93],"run":[95],"time":[96],"so":[97],"multiple":[98],"functions":[100,226],"are":[101,196,215],"be":[104],"selected":[105],"applied":[107],"from":[108,229],"single":[110],"binary.":[113],"We":[114],"introduce":[115],"implementation":[117],"pluggable":[120,182,207],"algorithm":[122],"also":[124,186],"provide":[125],"implementations":[126],"two":[128],"compatible":[130,138,187],"functions,":[132],"one":[133,142],"previously":[134],"described":[135],"with":[139,188],"PeptideProphet":[140],"very":[143],"simple":[144],"quantitative":[148],"researchers":[149],"may":[150],"use":[151],"begin":[153],"their":[154],"development.":[155],"This":[156],"extension":[157],"builds":[158],"open-source":[161],"project":[163],"will":[165],"facilitate":[166],"into":[168],"dissemination":[170],"novel":[172],"algorithms":[173],"matching":[175,204],"sequences.":[180],"schema":[184],"related":[189],"applications":[191,214],"P3":[192],"Hunter,":[194],"part":[197],"X!":[200,211],"suite":[201,212],"algorithms.":[205],"scores":[208],"all":[216],"written":[217],"in":[218],"C++.":[219],"AVAILABILITY:":[220],"Source":[221],"code":[222],"http://proteomics.fhcrc.org":[230]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":22}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
