{"id":"https://openalex.org/W2154792151","doi":"https://doi.org/10.1093/bioinformatics/btl274","title":"Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins","display_name":"Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions in proteins","publication_year":2006,"publication_date":"2006-10-23","ids":{"openalex":"https://openalex.org/W2154792151","doi":"https://doi.org/10.1093/bioinformatics/btl274","mag":"2154792151","pmid":"https://pubmed.ncbi.nlm.nih.gov/17060355"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2735/48839633/bioinformatics_22_22_2735.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2735/48839633/bioinformatics_22_22_2735.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073982818","display_name":"Anne E. Counterman Burba","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anne E. Counterman Burba","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055684761","display_name":"Ursula Lehnert","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ursula Lehnert","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039261930","display_name":"Eric Yu","orcid":"https://orcid.org/0000-0001-6374-2237"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Z. Yu","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042321575","display_name":"Mark Gerstein","orcid":"https://orcid.org/0000-0002-9746-3719"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Gerstein","raw_affiliation_strings":["Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University \u00a0 New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5073982818"],"corresponding_institution_ids":["https://openalex.org/I32971472"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8173,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.71396972,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"22","issue":"22","first_page":"2735","last_page":"2738"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/helix","display_name":"Helix (gastropod)","score":0.8808004856109619},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.511487603187561},{"id":"https://openalex.org/keywords/basic-helix-loop-helix","display_name":"Basic helix-loop-helix","score":0.4890802502632141},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.48133453726768494},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45971444249153137},{"id":"https://openalex.org/keywords/collagen-helix","display_name":"Collagen helix","score":0.4372907280921936},{"id":"https://openalex.org/keywords/alpha-helix","display_name":"Alpha helix","score":0.4163534939289093},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4078155755996704},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3835107684135437},{"id":"https://openalex.org/keywords/triple-helix","display_name":"Triple helix","score":0.37928342819213867},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.30944275856018066},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1663946509361267},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.1444205939769745},{"id":"https://openalex.org/keywords/dna-binding-protein","display_name":"DNA-binding protein","score":0.1404261589050293},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1278558075428009},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08379626274108887},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.06507411599159241},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.060449421405792236}],"concepts":[{"id":"https://openalex.org/C2778530040","wikidata":"https://www.wikidata.org/wiki/Q1937315","display_name":"Helix (gastropod)","level":3,"score":0.8808004856109619},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.511487603187561},{"id":"https://openalex.org/C6174537","wikidata":"https://www.wikidata.org/wiki/Q377955","display_name":"Basic helix-loop-helix","level":5,"score":0.4890802502632141},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.48133453726768494},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45971444249153137},{"id":"https://openalex.org/C155181932","wikidata":"https://www.wikidata.org/wiki/Q24768908","display_name":"Collagen helix","level":3,"score":0.4372907280921936},{"id":"https://openalex.org/C184538305","wikidata":"https://www.wikidata.org/wiki/Q283399","display_name":"Alpha helix","level":3,"score":0.4163534939289093},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4078155755996704},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3835107684135437},{"id":"https://openalex.org/C10919887","wikidata":"https://www.wikidata.org/wiki/Q7843514","display_name":"Triple helix","level":2,"score":0.37928342819213867},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.30944275856018066},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1663946509361267},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.1444205939769745},{"id":"https://openalex.org/C94966510","wikidata":"https://www.wikidata.org/wiki/Q2252764","display_name":"DNA-binding protein","level":4,"score":0.1404261589050293},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1278558075428009},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08379626274108887},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.06507411599159241},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.060449421405792236},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C2779965526","wikidata":"https://www.wikidata.org/wiki/Q308841","display_name":"Snail","level":2,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btl274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2735/48839633/bioinformatics_22_22_2735.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17060355","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17060355","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.100.5442","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.100.5442","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/btl274v1.pdf","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl274","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl274","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/22/2735/48839633/bioinformatics_22_22_2735.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154792151.pdf","grobid_xml":"https://content.openalex.org/works/W2154792151.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1511364405","https://openalex.org/W1576076722","https://openalex.org/W1994373739","https://openalex.org/W2029820720","https://openalex.org/W2033323125","https://openalex.org/W2062351773","https://openalex.org/W2063044149","https://openalex.org/W2074362388","https://openalex.org/W2080301705","https://openalex.org/W2095791446","https://openalex.org/W2105254477","https://openalex.org/W2114370367","https://openalex.org/W2116441099","https://openalex.org/W2120372728","https://openalex.org/W2122326469","https://openalex.org/W2128805758","https://openalex.org/W2137469714","https://openalex.org/W2140992384","https://openalex.org/W2141920771"],"related_works":["https://openalex.org/W1971835799","https://openalex.org/W2134826556","https://openalex.org/W3140968023","https://openalex.org/W1762414595","https://openalex.org/W4243396129","https://openalex.org/W2047219764","https://openalex.org/W2033060852","https://openalex.org/W2169955299","https://openalex.org/W2023100445","https://openalex.org/W2038890153"],"abstract_inverted_index":{"In":[0,38],"many":[1],"proteins,":[2],"helix-helix":[3,33,46,58],"interactions":[4],"can":[5,94],"be":[6,95],"critical":[7],"to":[8,40,104,127],"establishing":[9],"protein":[10,21,101],"conformation":[11],"(folding)":[12],"and":[13,78],"dynamics,":[14],"as":[15,17,82,84],"well":[16,83],"determining":[18],"associations":[19],"between":[20],"units.":[22],"However,":[23],"the":[24,45,73,89,114,123,128],"determination":[25],"of":[26,29,54,72,99],"a":[27,51,117],"set":[28],"rules":[30],"that":[31],"guide":[32],"interaction":[34,75],"has":[35,131],"been":[36,132],"elusive.":[37],"order":[39],"gain":[41,105],"further":[42],"insight":[43,106],"into":[44,107],"interface,":[47],"we":[48],"have":[49],"developed":[50],"comprehensive":[52],"package":[53],"tools":[55,63],"for":[56,87,97],"analyzing":[57],"packing":[59],"in":[60,110,122],"proteins.":[61],"These":[62,92],"are":[64],"available":[65],"at":[66],"http://helix.gersteinlab.org.":[67],"They":[68],"include":[69],"quantitative":[70],"measures":[71],"helix":[74,79,111],"surface":[76],"area":[77],"crossing":[80],"angle,":[81],"several":[85],"methods":[86,93],"visualizing":[88],"helical":[90],"interaction.":[91],"used":[96],"analysis":[98],"individual":[100],"conformations":[102],"or":[103],"dynamic":[108],"changes":[109],"interactions.":[112],"For":[113],"latter":[115],"purpose,":[116],"direct":[118],"interface":[119],"from":[120],"entries":[121],"Molecular":[124],"Motions":[125],"Database":[126],"HIT":[129],"site":[130],"provided.":[133]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}