{"id":"https://openalex.org/W2125848394","doi":"https://doi.org/10.1093/bioinformatics/btl261","title":"Accessing bioscience images from abstract sentences","display_name":"Accessing bioscience images from abstract sentences","publication_year":2006,"publication_date":"2006-07-15","ids":{"openalex":"https://openalex.org/W2125848394","doi":"https://doi.org/10.1093/bioinformatics/btl261","mag":"2125848394","pmid":"https://pubmed.ncbi.nlm.nih.gov/16873519"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/14/e547/48841318/bioinformatics_22_14_e547.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/14/e547/48841318/bioinformatics_22_14_e547.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017601806","display_name":"Hong Yu","orcid":"https://orcid.org/0000-0001-9263-5035"},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hong Yu","raw_affiliation_strings":["Department of Health Sciences, University of Wisconsin-Milwaukee 1 \u00a0 1 \u00a0 \u00a0 Wisconsin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences, University of Wisconsin-Milwaukee 1 \u00a0 1 \u00a0 \u00a0 Wisconsin","institution_ids":["https://openalex.org/I43579087"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079311236","display_name":"Minsuk Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I43579087","display_name":"University of Wisconsin\u2013Milwaukee","ror":"https://ror.org/031q21x57","country_code":"US","type":"education","lineage":["https://openalex.org/I43579087"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Minsuk Lee","raw_affiliation_strings":["CEAS, University of Wisconsin-Milwaukee 2 \u00a0 2 \u00a0 \u00a0 Wisconsin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CEAS, University of Wisconsin-Milwaukee 2 \u00a0 2 \u00a0 \u00a0 Wisconsin","institution_ids":["https://openalex.org/I43579087"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017601806"],"corresponding_institution_ids":["https://openalex.org/I43579087"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7728,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.83689821,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"22","issue":"14","first_page":"e547","last_page":"e556"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.972599983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7966636419296265},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6027895212173462},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5770832300186157},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5205456018447876},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.46940529346466064},{"id":"https://openalex.org/keywords/image-manipulation","display_name":"Image manipulation","score":0.4353887438774109},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4123441278934479},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39199310541152954},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3435361385345459}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7966636419296265},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6027895212173462},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5770832300186157},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5205456018447876},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.46940529346466064},{"id":"https://openalex.org/C2987933465","wikidata":"https://www.wikidata.org/wiki/Q141130","display_name":"Image manipulation","level":3,"score":0.4353887438774109},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4123441278934479},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39199310541152954},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3435361385345459},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/14/e547/48841318/bioinformatics_22_14_e547.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16873519","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16873519","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl261","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl261","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/14/e547/48841318/bioinformatics_22_14_e547.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6499999761581421,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125848394.pdf","grobid_xml":"https://content.openalex.org/works/W2125848394.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1489181569","https://openalex.org/W1525742988","https://openalex.org/W1550258693","https://openalex.org/W1563486531","https://openalex.org/W1575299154","https://openalex.org/W1647729745","https://openalex.org/W1979346010","https://openalex.org/W1987869189","https://openalex.org/W1994306321","https://openalex.org/W1998300401","https://openalex.org/W1999262482","https://openalex.org/W2034767282","https://openalex.org/W2050006154","https://openalex.org/W2068086934","https://openalex.org/W2076333420","https://openalex.org/W2080558111","https://openalex.org/W2105892820","https://openalex.org/W2119412782","https://openalex.org/W2124973181","https://openalex.org/W2129468719","https://openalex.org/W2130190939","https://openalex.org/W2137540340","https://openalex.org/W2137881949","https://openalex.org/W2148395543","https://openalex.org/W2152653671","https://openalex.org/W2160484851","https://openalex.org/W2166190866","https://openalex.org/W2166776180","https://openalex.org/W2168929382","https://openalex.org/W2270018644","https://openalex.org/W2953369829","https://openalex.org/W4230511558","https://openalex.org/W4248176770","https://openalex.org/W4248234957","https://openalex.org/W4254004579","https://openalex.org/W4255198209","https://openalex.org/W6638464990"],"related_works":["https://openalex.org/W1834608617","https://openalex.org/W2384888906","https://openalex.org/W2376314740","https://openalex.org/W1999627569","https://openalex.org/W2366644548","https://openalex.org/W2380998760","https://openalex.org/W2357241418","https://openalex.org/W763609066","https://openalex.org/W2119214692","https://openalex.org/W3012401223"],"abstract_inverted_index":{"Images":[0],"(e.g.,":[1],"figures)":[2],"are":[3,8,50],"important":[4],"experimental":[5],"results":[6,126],"that":[7,55,70,115,128,145,155,168],"typically":[9],"reported":[10,75],"in":[11,39,61,76,86,132],"bioscience":[12],"full-text":[13,78],"articles.":[14],"Biologists":[15],"need":[16],"to":[17,20,25,28,118,150,170],"access":[18,59,119],"images":[19,60,120],"validate":[21],"research":[22,31],"facts":[23],"and":[24,104],"formulate":[26],"or":[27],"test":[29],"novel":[30,112],"hypotheses.":[32],"On":[33],"the":[34,84,87,90,157,161],"other":[35,138],"hand,":[36],"biologists":[37,57,99,108,117,130],"live":[38],"an":[40],"age":[41],"of":[42,47,72,89,134,160,166,173],"information":[43],"explosion.":[44],"As":[45],"thousands":[46],"biomedical":[48,66],"articles":[49],"published":[51],"every":[52],"day,":[53],"systems":[54,144,162],"help":[56],"efficiently":[58],"literature":[62],"would":[63],"greatly":[64],"facilitate":[65],"research.":[67],"We":[68,141],"hypothesize":[69],"much":[71],"image":[73],"content":[74],"a":[77,111,164,171],"article":[79],"can":[80],"be":[81],"summarized":[82],"by":[83],"sentences":[85,154],"abstract":[88,123,153],"article.":[91],"In":[92],"our":[93],"study,":[94],"more":[95,105],"than":[96,106],"one":[97],"hundred":[98],"had":[100,109],"tested":[101],"this":[102],"hypothesis":[103],"40":[107],"evaluated":[110],"user-interface":[113],"BioEx":[114,135],"allows":[116],"directly":[121],"from":[122],"sentences.":[124],"Our":[125],"show":[127],"87.8%":[129],"were":[131],"favor":[133],"over":[136],"two":[137],"baseline":[139],"user-interfaces.":[140],"further":[142],"developed":[143],"explored":[146],"hierarchical":[147],"clustering":[148],"algorithms":[149],"automatically":[151],"identify":[152],"summarize":[156],"images.":[158],"One":[159],"achieves":[163],"precision":[165],"100%":[167],"corresponds":[169],"recall":[172],"4.6%.":[174]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":7},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
