{"id":"https://openalex.org/W2154506039","doi":"https://doi.org/10.1093/bioinformatics/btl136","title":"SNAP: Combine and Map modules for multilocus population genetic analysis","display_name":"SNAP: Combine and Map modules for multilocus population genetic analysis","publication_year":2006,"publication_date":"2006-04-06","ids":{"openalex":"https://openalex.org/W2154506039","doi":"https://doi.org/10.1093/bioinformatics/btl136","mag":"2154506039","pmid":"https://pubmed.ncbi.nlm.nih.gov/16601003"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl136","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/11/1399/48838780/bioinformatics_22_11_1399.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/11/1399/48838780/bioinformatics_22_11_1399.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020752897","display_name":"David L. Aylor","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David L. Aylor","raw_affiliation_strings":["Bioinformatics Research Center, North Carolina State University 1 \u00a0 1 \u00a0 \u00a0 Raleigh, NC 27695, USA","Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University 2 \u00a0 2 \u00a0 \u00a0 Raleigh, NC 27695, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University 1 \u00a0 1 \u00a0 \u00a0 Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University 2 \u00a0 2 \u00a0 \u00a0 Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068832743","display_name":"Eric W. Price","orcid":"https://orcid.org/0000-0002-8619-1199"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric W. Price","raw_affiliation_strings":["Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University 2 \u00a0 2 \u00a0 \u00a0 Raleigh, NC 27695, USA"],"affiliations":[{"raw_affiliation_string":"Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University 2 \u00a0 2 \u00a0 \u00a0 Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015592178","display_name":"Ignazio Carbone","orcid":"https://orcid.org/0000-0003-2721-6656"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ignazio Carbone","raw_affiliation_strings":["Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University 2 \u00a0 2 \u00a0 \u00a0 Raleigh, NC 27695, USA"],"affiliations":[{"raw_affiliation_string":"Center for Integrated Fungal Research, Department of Plant Pathology, North Carolina State University 2 \u00a0 2 \u00a0 \u00a0 Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020752897"],"corresponding_institution_ids":["https://openalex.org/I137902535"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.2228,"has_fulltext":true,"cited_by_count":120,"citation_normalized_percentile":{"value":0.94773327,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"22","issue":"11","first_page":"1399","last_page":"1401"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5370129346847534},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5328972935676575},{"id":"https://openalex.org/keywords/genetic-analysis","display_name":"Genetic analysis","score":0.49809980392456055},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3667870759963989},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.365326464176178},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3179308772087097},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.0910891592502594},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06008687615394592}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5370129346847534},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5328972935676575},{"id":"https://openalex.org/C23085057","wikidata":"https://www.wikidata.org/wiki/Q5532877","display_name":"Genetic analysis","level":3,"score":0.49809980392456055},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3667870759963989},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.365326464176178},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3179308772087097},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0910891592502594},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06008687615394592},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btl136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl136","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/11/1399/48838780/bioinformatics_22_11_1399.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16601003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16601003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl136","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl136","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/11/1399/48838780/bioinformatics_22_11_1399.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8164471825","display_name":null,"funder_award_id":"IGERT","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320308571","display_name":"North Carolina Biotechnology Center","ror":"https://ror.org/03hj4jr80"},{"id":"https://openalex.org/F4320332483","display_name":"Cooperative State Research, Education, and Extension Service","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154506039.pdf","grobid_xml":"https://content.openalex.org/works/W2154506039.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1546639740","https://openalex.org/W1566107011","https://openalex.org/W1580819302","https://openalex.org/W1830906757","https://openalex.org/W1934545424","https://openalex.org/W1979900996","https://openalex.org/W1980674207","https://openalex.org/W1998671658","https://openalex.org/W2001707565","https://openalex.org/W2002715980","https://openalex.org/W2015292449","https://openalex.org/W2072362336","https://openalex.org/W2097276024","https://openalex.org/W2100412820","https://openalex.org/W2106882534","https://openalex.org/W2111655339","https://openalex.org/W2112621018","https://openalex.org/W2121620853","https://openalex.org/W2130769449","https://openalex.org/W2131269707","https://openalex.org/W2132688750","https://openalex.org/W2143588014","https://openalex.org/W2148829009","https://openalex.org/W2149526237","https://openalex.org/W2153161141","https://openalex.org/W2153444912","https://openalex.org/W2157433394","https://openalex.org/W2170284968","https://openalex.org/W2318800762","https://openalex.org/W3217097258","https://openalex.org/W4229653950","https://openalex.org/W4233359534","https://openalex.org/W4237691176","https://openalex.org/W4388362315","https://openalex.org/W6634777525","https://openalex.org/W6682299087"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"We":[0],"have":[1],"added":[2],"two":[3],"software":[4,44,70],"tools":[5],"to":[6,145,175],"our":[7],"Suite":[8],"of":[9,98,134,161,167],"Nucleotide":[10],"Analysis":[11],"Programs":[12],"(SNAP)":[13],"for":[14,40,46,66,72,108,186],"working":[15],"with":[16,101],"DNA":[17,25,51,116],"sequences":[18,100],"sampled":[19],"from":[20,142],"populations.":[21],"SNAP":[22,112,138],"Map":[23,49,75],"collapses":[24,50],"sequence":[26,52,117,147],"data":[27,53],"into":[28,37,42,54,63,68,119],"unique":[29,55],"haplotypes,":[30,56],"extracts":[31,57],"variable":[32,58,88,177],"sites":[33,59,89,178],"and":[34,60,95,143,154,164],"manipulates":[35,61],"output":[36,62],"multiple":[38,64,115,122],"formats":[39,65,150],"input":[41,67,136,184],"existing":[43,69],"packages":[45,71],"evolutionary":[47,73],"analyses.":[48,74,188],"includes":[76],"novel":[77],"features":[78],"such":[79],"as":[80],"recoding":[81],"insertions":[82],"or":[83,86,132,179],"deletions,":[84],"including":[85,151],"excluding":[87],"that":[90],"violate":[91],"an":[92],"infinite-sites":[93],"model":[94],"the":[96,130,135,162,173],"option":[97],"collapsing":[99],"corresponding":[102],"phenotypic":[103],"information,":[104],"important":[105,181],"in":[106,182],"testing":[107],"significant":[109],"haplotype-phenotype":[110],"associations.":[111],"Combine":[113,139,157],"merges":[114],"alignments":[118],"a":[120],"single":[121],"alignment":[123,148,170],"file.":[124],"The":[125],"resulting":[126],"file":[127,149,171],"can":[128],"be":[129],"union":[131],"intersection":[133],"files.":[137],"currently":[140],"reads":[141],"writes":[144],"several":[146],"both":[152],"sequential":[153],"interleaved":[155],"formats.":[156],"also":[158],"keeps":[159],"track":[160],"start":[163],"end":[165],"positions":[166],"each":[168],"separate":[169],"allowing":[172],"user":[174],"exclude":[176],"taxa,":[180],"creating":[183],"files":[185],"multilocus":[187]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":8}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}