{"id":"https://openalex.org/W2155035566","doi":"https://doi.org/10.1093/bioinformatics/btl101","title":"XQTav: an XQuery processor for Taverna environment","display_name":"XQTav: an XQuery processor for Taverna environment","publication_year":2006,"publication_date":"2006-03-21","ids":{"openalex":"https://openalex.org/W2155035566","doi":"https://doi.org/10.1093/bioinformatics/btl101","mag":"2155035566","pmid":"https://pubmed.ncbi.nlm.nih.gov/16551662"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl101","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/10/1280/48838233/bioinformatics_22_10_1280.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/10/1280/48838233/bioinformatics_22_10_1280.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091346096","display_name":"Jacek Sroka","orcid":"https://orcid.org/0000-0002-1714-9667"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Jacek Sroka","raw_affiliation_strings":["Warsaw University 1 \u00a0 1 \u00a0 \u00a0 Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Warsaw University 1 \u00a0 1 \u00a0 \u00a0 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066897866","display_name":"Grzegorz Kaczor","orcid":"https://orcid.org/0000-0002-0858-1028"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Grzegorz Kaczor","raw_affiliation_strings":["Warsaw University 1 \u00a0 1 \u00a0 \u00a0 Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Warsaw University 1 \u00a0 1 \u00a0 \u00a0 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080463191","display_name":"Jerzy Tyszkiewicz","orcid":"https://orcid.org/0000-0003-2858-3124"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jerzy Tyszkiewicz","raw_affiliation_strings":["Warsaw University 1 \u00a0 1 \u00a0 \u00a0 Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Warsaw University 1 \u00a0 1 \u00a0 \u00a0 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015589509","display_name":"Andrzej Kierzek","orcid":"https://orcid.org/0000-0002-2605-9057"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Andrzej M. Kierzek","raw_affiliation_strings":["SBMS, University of Surrey 2 \u00a0 2 \u00a0 \u00a0 Guildford, GU2 7XH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SBMS, University of Surrey 2 \u00a0 2 \u00a0 \u00a0 Guildford, GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5015589509","https://openalex.org/A5091346096"],"corresponding_institution_ids":["https://openalex.org/I28290843","https://openalex.org/I4654613"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.7106,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.84614008,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"10","first_page":"1280","last_page":"1281"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.5719000101089478,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.5719000101089478,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1615000069141388,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.05609999969601631,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xquery","display_name":"XQuery","score":0.8873703479766846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8191773891448975},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7606363892555237},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.6145480871200562},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.523425817489624},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.48921847343444824},{"id":"https://openalex.org/keywords/codebase","display_name":"Codebase","score":0.4548313319683075},{"id":"https://openalex.org/keywords/xpath","display_name":"XPath","score":0.4254201352596283},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.41116490960121155},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.37346625328063965},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36877480149269104},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3303986191749573},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2857969105243683},{"id":"https://openalex.org/keywords/xml-database","display_name":"XML database","score":0.13000890612602234}],"concepts":[{"id":"https://openalex.org/C2780512708","wikidata":"https://www.wikidata.org/wiki/Q850661","display_name":"XQuery","level":4,"score":0.8873703479766846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8191773891448975},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7606363892555237},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.6145480871200562},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.523425817489624},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.48921847343444824},{"id":"https://openalex.org/C51929080","wikidata":"https://www.wikidata.org/wiki/Q2425187","display_name":"Codebase","level":3,"score":0.4548313319683075},{"id":"https://openalex.org/C2780213375","wikidata":"https://www.wikidata.org/wiki/Q16340","display_name":"XPath","level":4,"score":0.4254201352596283},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.41116490960121155},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.37346625328063965},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36877480149269104},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3303986191749573},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2857969105243683},{"id":"https://openalex.org/C183068750","wikidata":"https://www.wikidata.org/wiki/Q357393","display_name":"XML database","level":3,"score":0.13000890612602234}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btl101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl101","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/10/1280/48838233/bioinformatics_22_10_1280.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16551662","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16551662","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:alma.44SUR_INST:11138562570002346","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"Open Research (University of Surrey)","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:epubs.surrey.ac.uk:239131","is_oa":false,"landing_page_url":"http://epubs.surrey.ac.uk/239131/1/XQTav.pdf","pdf_url":"http://epubs.surrey.ac.uk/239131/1/XQTav.pdf","source":{"id":"https://openalex.org/S4306400680","display_name":"Surrey Research Insight Open Access (The University of Surrey)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28290843","host_organization_name":"University of Surrey","host_organization_lineage":["https://openalex.org/I28290843"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl101","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl101","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/10/1280/48838233/bioinformatics_22_10_1280.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155035566.pdf"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W7575860","https://openalex.org/W172857819","https://openalex.org/W2061636126","https://openalex.org/W2103017472","https://openalex.org/W2103129584","https://openalex.org/W2158527924","https://openalex.org/W2161062388","https://openalex.org/W2168103533","https://openalex.org/W6607036282"],"related_works":["https://openalex.org/W2355446901","https://openalex.org/W2486756614","https://openalex.org/W4213327256","https://openalex.org/W2073024456","https://openalex.org/W2062115694","https://openalex.org/W4252166815","https://openalex.org/W1997305375","https://openalex.org/W214946328","https://openalex.org/W4253215314","https://openalex.org/W1517184773"],"abstract_inverted_index":{"UNLABELLED:":[0],"Taverna":[1,48,68,73,91,141],"workbench":[2],"is":[3,23,93,118,138,145,167],"an":[4,84,114,168],"environment":[5],"for":[6,58],"construction,":[7],"visualization":[8],"and":[9,35,92,103,129,147,184],"execution":[10,63],"of":[11,28,47,64,87,127,135],"bioinformatic":[12,33,131],"workflows":[13],"that":[14,49,117],"integrate":[15],"specialized":[16],"tools":[17],"available":[18],"through":[19],"the":[20,30,79,187],"internet.":[21],"It":[22,152,172],"gaining":[24],"popularity":[25],"fast,":[26],"because":[27],"supporting":[29],"most":[31],"important":[32],"services":[34],"its":[36],"simple,":[37],"yet":[38],"robust":[39],"graphical":[40],"notation.":[41],"Here":[42],"we":[43],"present":[44],"XQTav-an":[45],"extension":[46],"provides":[50,83],"full":[51],"integration":[52],"with":[53,98],"XQuery":[54,65,80,115,143,157],"(the":[55],"query":[56],"language":[57],"XML)":[59],"engine.":[60],"XQTav":[61],"allows":[62],"scripts":[66],"in":[67,78,90,140,190],"workflow":[69],"diagrams.":[70],"All":[71],"existing":[72],"processors":[74],"can":[75,153],"be":[76,109,154,174],"accessed":[77],"scripts.":[81],"This":[82,123],"alternative":[85],"way":[86,126],"specifying":[88],"subworkflows":[89],"useful":[94],"when":[95],"one":[96,188],"deals":[97],"query-like":[99],"algorithms":[100],"(e.g.":[101],"filters":[102],"inner":[104],"joins).":[105],"Moreover,":[106],"XQtav":[107,166],"may":[108,173],"used":[110],"to":[111,120],"automatically":[112],"generate":[113],"script":[116],"equivalent":[119],"Taverna's":[121],"workflow.":[122],"constitutes":[124],"another":[125],"creating":[128],"enacting":[130],"workflows:":[132],"overall":[133],"structure":[134],"a":[136],"diagram":[137],"drawn":[139],"environment,":[142],"code":[144],"generated":[146],"possibly":[148],"adjusted":[149],"by":[150,156],"hand.":[151],"executed":[155],"engines":[158],"or":[159],"incorporated":[160],"into":[161],"other":[162],"software":[163],"environments.":[164],"AVAILABILITY:":[165],"open":[169],"source":[170],"software.":[171],"downloaded":[175],"from":[176],"http://xqtav.sourceforge.net/.":[177],"The":[178],"page":[179],"also":[180],"contains":[181],"various":[182],"tutorials":[183],"examples,":[185],"including":[186],"described":[189],"this":[191],"report.":[192]},"counts_by_year":[],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
