{"id":"https://openalex.org/W2140317473","doi":"https://doi.org/10.1093/bioinformatics/btl028","title":"Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support","display_name":"Look-Align: an interactive web-based multiple sequence alignment viewer with polymorphism analysis support","publication_year":2006,"publication_date":"2006-02-10","ids":{"openalex":"https://openalex.org/W2140317473","doi":"https://doi.org/10.1093/bioinformatics/btl028","mag":"2140317473","pmid":"https://pubmed.ncbi.nlm.nih.gov/16473875"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl028","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl028","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066160486","display_name":"Canaran Payan","orcid":null},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Payan Canaran","raw_affiliation_strings":["Cold Spring Harbor Laboratory 1 \u00a0 1 \u00a0 \u00a0 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory 1 \u00a0 1 \u00a0 \u00a0 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052076713","display_name":"Lincoln Stein","orcid":"https://orcid.org/0000-0002-1983-4588"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lincoln Stein","raw_affiliation_strings":["Cold Spring Harbor Laboratory 1 \u00a0 1 \u00a0 \u00a0 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory 1 \u00a0 1 \u00a0 \u00a0 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077105419","display_name":"Doreen Ware","orcid":"https://orcid.org/0000-0002-8125-3821"},"institutions":[{"id":"https://openalex.org/I2750212522","display_name":"Cold Spring Harbor Laboratory","ror":"https://ror.org/02qz8b764","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2750212522"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Doreen Ware","raw_affiliation_strings":["Cold Spring Harbor Laboratory 1 \u00a0 1 \u00a0 \u00a0 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","USDA-ARS NAA Plant, Soil and Nutrition Laboratory Research Unit 2 \u00a0 2 \u00a0 \u00a0 Tower Road, Ithaca, NY 14853-2901, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cold Spring Harbor Laboratory 1 \u00a0 1 \u00a0 \u00a0 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA","institution_ids":["https://openalex.org/I2750212522"]},{"raw_affiliation_string":"USDA-ARS NAA Plant, Soil and Nutrition Laboratory Research Unit 2 \u00a0 2 \u00a0 \u00a0 Tower Road, Ithaca, NY 14853-2901, USA","institution_ids":["https://openalex.org/I87424562"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.641,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.66837467,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"22","issue":"7","first_page":"885","last_page":"886"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.16859999299049377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.16859999299049377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.15559999644756317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.12780000269412994,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6465491056442261},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4752518832683563},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4128905236721039},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3687339723110199},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3318334221839905},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2384033203125},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18174347281455994}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6465491056442261},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4752518832683563},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4128905236721039},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3687339723110199},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3318334221839905},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2384033203125},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18174347281455994}],"mesh":[{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011110","descriptor_name":"Polymorphism, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btl028","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl028","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.97.7476","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.97.7476","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"http://bioinformatics.oxfordjournals.org/cgi/reprint/btl028v1.pdf","raw_type":"text"},{"id":"pmid:16473875","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16473875","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:repository.cshl.edu:22765","is_oa":false,"landing_page_url":"https://repository.cshl.edu/id/eprint/22765/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402288","display_name":"Cold Spring Harbor Laboratory Institutional Repository (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332605","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W1980397590","https://openalex.org/W2102626325","https://openalex.org/W2128613007"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"UNLABELLED:":[0],"We":[1],"have":[2],"developed":[3,17],"Look-Align,":[4],"an":[5,58],"interactive":[6],"web-based":[7],"viewer":[8,31],"to":[9,18],"display":[10],"pre-computed":[11],"multiple":[12,85],"sequence":[13,86],"alignments.":[14],"Although":[15],"initially":[16],"support":[19],"the":[20,24,30,70,93],"visualization":[21],"needs":[22],"of":[23,84,92],"maize":[25],"diversity":[26],"website":[27,72],"Panzea":[28,71],"(http://www.panzea.org),":[29],"is":[32,47,55],"a":[33],"generic":[34],"stand-alone":[35],"tool":[36],"that":[37],"can":[38,66],"be":[39,67],"easily":[40],"integrated":[41],"into":[42],"other":[43],"websites.":[44],"AVAILABILITY:":[45],"Look-Align":[46],"written":[48],"in":[49],"Perl":[50],"using":[51],"open-source":[52,59],"components":[53],"and":[54,63,89],"available":[56],"under":[57],"license.":[60],"Live":[61],"installation":[62],"download":[64],"information":[65,80],"found":[68],"at":[69],"(http://www.panzea.org/software/alignment_viewer.html).":[73],"CONTACT:":[74],"ware@cshl.edu":[75],"SUPPLEMENTARY":[76],"INFORMATION:":[77],"The":[78],"Supplementary":[79],"includes":[81],"sample":[82,90],"lists":[83],"alignment":[87],"software":[88],"screenshots":[91],"viewer.":[94]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
