{"id":"https://openalex.org/W2168933537","doi":"https://doi.org/10.1093/bioinformatics/btl021","title":"AMiGA: the arthropodan mitochondrial genomes accessible database","display_name":"AMiGA: the arthropodan mitochondrial genomes accessible database","publication_year":2006,"publication_date":"2006-01-29","ids":{"openalex":"https://openalex.org/W2168933537","doi":"https://doi.org/10.1093/bioinformatics/btl021","mag":"2168933537","pmid":"https://pubmed.ncbi.nlm.nih.gov/16446277"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl021","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/7/902/48841378/bioinformatics_22_7_902.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/7/902/48841378/bioinformatics_22_7_902.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025531180","display_name":"Pedro Feij\u00e3o","orcid":null},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Pedro Cipriano Feij\u00e3o","raw_affiliation_strings":["Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024982040","display_name":"Lissiene Silva Neiva","orcid":null},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Lissiene Silva Neiva","raw_affiliation_strings":["Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069553379","display_name":"Ana Maria Lima de Azeredo\u2010Espin","orcid":"https://orcid.org/0000-0002-9664-6791"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ana Maria Lima de Azeredo-Espin","raw_affiliation_strings":["Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035909828","display_name":"Ana Cl\u00e1udia Lessinger","orcid":"https://orcid.org/0000-0002-2719-9457"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Ana Cl\u00e1udia Lessinger","raw_affiliation_strings":["Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laborat\u00f3rio de Gen\u00e9tica Animal, Centro de Biologia Molecular e Engenharia Gen\u00e9tica (CBMEG), Universidade Estadual de Campinas (UNICAMP) \u00a0 CP 6010, CEP 13035-875, Campinas, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035909828"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":6.0921,"has_fulltext":false,"cited_by_count":51,"citation_normalized_percentile":{"value":0.96114228,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"22","issue":"7","first_page":"902","last_page":"903"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11926","display_name":"Subterranean biodiversity and taxonomy","score":0.2581000030040741,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11926","display_name":"Subterranean biodiversity and taxonomy","score":0.2581000030040741,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10765","display_name":"Marine Biology and Ecology Research","score":0.15950000286102295,"subfield":{"id":"https://openalex.org/subfields/1910","display_name":"Oceanography"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.07190000265836716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5889216661453247},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5165842771530151},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.5146928429603577},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5136005878448486},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.49930334091186523},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4896145462989807},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39794641733169556},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36439913511276245},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31470298767089844},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24860736727714539},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23437312245368958},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07347878813743591}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5889216661453247},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5165842771530151},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.5146928429603577},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5136005878448486},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.49930334091186523},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4896145462989807},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39794641733169556},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36439913511276245},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31470298767089844},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24860736727714539},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23437312245368958},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07347878813743591},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001181","descriptor_name":"Arthropods","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001181","descriptor_name":"Arthropods","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001181","descriptor_name":"Arthropods","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001181","descriptor_name":"Arthropods","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001181","descriptor_name":"Arthropods","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001181","descriptor_name":"Arthropods","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004272","descriptor_name":"DNA, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btl021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl021","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/7/902/48841378/bioinformatics_22_7_902.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16446277","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16446277","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pub.librecat.org:2659363","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2659363","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Feij\u00e3o P, Neiva LS, Azeredo-Espin AML d., Lessinger AC. AMiGA: the arthropodan mitochondrial genomes accessible database. <em>Bioinformatics</em>. 2006;22(7):902-903.","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl021","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl021","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/7/902/48841378/bioinformatics_22_7_902.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2168933537.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1997954369","https://openalex.org/W2026197201","https://openalex.org/W2055043387","https://openalex.org/W2092147421","https://openalex.org/W2094034987","https://openalex.org/W2099583543","https://openalex.org/W2106882534","https://openalex.org/W2107903949","https://openalex.org/W2118675686","https://openalex.org/W2121016876","https://openalex.org/W2148607481","https://openalex.org/W2150934173","https://openalex.org/W4230932396","https://openalex.org/W4251079740"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W193851735","https://openalex.org/W2773861473","https://openalex.org/W1971903861","https://openalex.org/W3047903919","https://openalex.org/W2003932708"],"abstract_inverted_index":{"UNLABELLED:":[0],"The":[1,38],"Arthropodan":[2],"Mitochondrial":[3],"Genomes":[4],"Accessible":[5],"database":[6,11,49],"(AMiGA)":[7],"is":[8,150],"a":[9,44,51,108,124],"relational":[10],"developed":[12],"to":[13,18],"help":[14],"in":[15,27,123,135],"managing":[16],"access":[17],"the":[19,62,84,117,131,136,153],"increasing":[20],"amount":[21],"of":[22,35,40,55,64,86,93,98,119],"data":[23],"arising":[24],"from":[25,107,152],"developments":[26],"arthropodan":[28],"mitochondrial":[29,32,56],"genomics":[30],"(136":[31],"genomes":[33,57],"as":[34,73],"September":[36],"2005).":[37],"strengths":[39],"AMiGA":[41,113],"include":[42],"(1)":[43],"more":[45,52,101],"accessible":[46],"and":[47,80,103,115],"up-to-date":[48],"containing":[50],"comprehensive":[53],"set":[54],"for":[58,68,127],"this":[59],"phylum,":[60],"(2)":[61],"provision":[63],"flexible":[65],"search":[66],"options":[67],"retrieving":[69],"detailed":[70],"information":[71,105],"such":[72],"bibliographical":[74],"data,":[75],"genomic":[76],"graphics,":[77],"FASTA":[78],"sequences":[79,122,133],"taxonomical":[81],"status,":[82],"(3)":[83],"possibility":[85,118],"enhanced":[87],"comparative":[88,128],"analyses":[89],"by":[90],"multiple":[91],"alignment":[92],"single":[94],"or":[95],"concatenated":[96],"sets":[97],"genes,":[99],"(4)":[100],"accurate":[102],"updated":[104],"resulting":[106],"specific":[109],"curation":[110],"process":[111],"called":[112],"Notes":[114],"(5)":[116],"including":[120,146],"unpublished":[121],"password-restricted":[125],"area":[126],"analysis":[129],"with":[130],"other":[132],"stored":[134],"database.":[137],"AVAILABILITY:":[138],"http://amiga.cbmeg.unicamp.br":[139],"CONTACT:":[140],"lessinger@amiga.cbmeg.unicamp.br":[141],"SUPPLEMENTARY":[142],"INFORMATION:":[143],"Detailed":[144],"information,":[145],"an":[147],"illustrated":[148],"tutorial,":[149],"available":[151],"above":[154],"URL.":[155]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":6},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}