{"id":"https://openalex.org/W2131776775","doi":"https://doi.org/10.1093/bioinformatics/btl020","title":"Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale","display_name":"Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale","publication_year":2006,"publication_date":"2006-01-29","ids":{"openalex":"https://openalex.org/W2131776775","doi":"https://doi.org/10.1093/bioinformatics/btl020","mag":"2131776775","pmid":"https://pubmed.ncbi.nlm.nih.gov/16446278"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btl020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/989/48841458/bioinformatics_22_8_989.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/989/48841458/bioinformatics_22_8_989.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066737474","display_name":"Haiquan Li","orcid":"https://orcid.org/0000-0002-8049-0278"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Haiquan Li","raw_affiliation_strings":["Institute for Infocomm Research 1 \u00a0 1 \u00a0 \u00a0 21 Heng Mui Keng Terrace, Singapore 119613, Singapore","School of Computing, National University of Singapore 2 \u00a0 2 \u00a0 \u00a0 Singapore 117543, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research 1 \u00a0 1 \u00a0 \u00a0 21 Heng Mui Keng Terrace, Singapore 119613, Singapore","institution_ids":["https://openalex.org/I3005327000"]},{"raw_affiliation_string":"School of Computing, National University of Singapore 2 \u00a0 2 \u00a0 \u00a0 Singapore 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017861049","display_name":"Jinyan Li","orcid":"https://orcid.org/0000-0003-1833-7413"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Jinyan Li","raw_affiliation_strings":["Institute for Infocomm Research 1 \u00a0 1 \u00a0 \u00a0 21 Heng Mui Keng Terrace, Singapore 119613, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research 1 \u00a0 1 \u00a0 \u00a0 21 Heng Mui Keng Terrace, Singapore 119613, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012381970","display_name":"Limsoon Wong","orcid":"https://orcid.org/0000-0003-1241-5441"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Limsoon Wong","raw_affiliation_strings":["Institute for Infocomm Research 1 \u00a0 1 \u00a0 \u00a0 21 Heng Mui Keng Terrace, Singapore 119613, Singapore","School of Computing, National University of Singapore 2 \u00a0 2 \u00a0 \u00a0 Singapore 117543, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research 1 \u00a0 1 \u00a0 \u00a0 21 Heng Mui Keng Terrace, Singapore 119613, Singapore","institution_ids":["https://openalex.org/I3005327000"]},{"raw_affiliation_string":"School of Computing, National University of Singapore 2 \u00a0 2 \u00a0 \u00a0 Singapore 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5017861049"],"corresponding_institution_ids":["https://openalex.org/I3005327000"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":3.718,"has_fulltext":true,"cited_by_count":66,"citation_normalized_percentile":{"value":0.93762477,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"22","issue":"8","first_page":"989","last_page":"996"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8991000056266785,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8991000056266785,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.06030000001192093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.008100000210106373,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5739274621009827},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5505570769309998},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.539857029914856},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.4918241500854492},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4607788920402527},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4333347976207733},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35809019207954407},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3255961537361145},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.13566556572914124},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09101733565330505}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5739274621009827},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5505570769309998},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.539857029914856},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.4918241500854492},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4607788920402527},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4333347976207733},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35809019207954407},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3255961537361145},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.13566556572914124},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09101733565330505},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btl020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/989/48841458/bioinformatics_22_8_989.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16446278","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16446278","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Evaluation Study"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/39675","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/39675","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/14877","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/14877","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btl020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btl020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/8/989/48841458/bioinformatics_22_8_989.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131776775.pdf","grobid_xml":"https://content.openalex.org/works/W2131776775.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W159524162","https://openalex.org/W1484413656","https://openalex.org/W1518078436","https://openalex.org/W1523098315","https://openalex.org/W1585646276","https://openalex.org/W1590648220","https://openalex.org/W1857685991","https://openalex.org/W1966421023","https://openalex.org/W1967356215","https://openalex.org/W1969051510","https://openalex.org/W1971143006","https://openalex.org/W1974156712","https://openalex.org/W1982496832","https://openalex.org/W1988422871","https://openalex.org/W1988560002","https://openalex.org/W1994328785","https://openalex.org/W2000093524","https://openalex.org/W2004981595","https://openalex.org/W2005313213","https://openalex.org/W2005386926","https://openalex.org/W2031772330","https://openalex.org/W2039928024","https://openalex.org/W2040074453","https://openalex.org/W2040941311","https://openalex.org/W2050842004","https://openalex.org/W2054291744","https://openalex.org/W2056002855","https://openalex.org/W2079535727","https://openalex.org/W2080922074","https://openalex.org/W2087064593","https://openalex.org/W2094039395","https://openalex.org/W2096119514","https://openalex.org/W2099982459","https://openalex.org/W2101330776","https://openalex.org/W2101803429","https://openalex.org/W2101896525","https://openalex.org/W2105902442","https://openalex.org/W2106882534","https://openalex.org/W2107811186","https://openalex.org/W2109228802","https://openalex.org/W2115156437","https://openalex.org/W2115410056","https://openalex.org/W2128276810","https://openalex.org/W2129414710","https://openalex.org/W2129448726","https://openalex.org/W2147466870","https://openalex.org/W2148934552","https://openalex.org/W2149758239","https://openalex.org/W2155500679","https://openalex.org/W2156698976","https://openalex.org/W2163740345","https://openalex.org/W2164391585","https://openalex.org/W2166699767","https://openalex.org/W2167348517","https://openalex.org/W4237572013","https://openalex.org/W6606471382","https://openalex.org/W6628750762","https://openalex.org/W6631166904","https://openalex.org/W6651346273","https://openalex.org/W6684593029"],"related_works":["https://openalex.org/W4229728790","https://openalex.org/W2800059693","https://openalex.org/W1987705964","https://openalex.org/W2099913238","https://openalex.org/W1841073402","https://openalex.org/W4377086792","https://openalex.org/W2414873431","https://openalex.org/W2949751838","https://openalex.org/W2145100112","https://openalex.org/W2137238644"],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein-protein":[1],"interaction,":[2],"mediated":[3],"by":[4,75,119],"protein":[5,29,35,48,97,117,132,136,176,199],"interaction":[6,30,36,55,72,87,93,106,137,181,292],"sites,":[7],"is":[8,139,153,192],"intrinsic":[9],"to":[10,25,103,235],"many":[11],"functional":[12],"processes":[13],"in":[14,28,60,78,166,211,221,242,258,282],"the":[15,57,67,76,79,92,96,113,151,190,212,222],"cell.":[16],"In":[17],"this":[18],"paper,":[19],"we":[20,227,277,295],"propose":[21],"a":[22,41,62,70,116,140,145,162,179],"novel":[23],"method":[24],"discover":[26],"patterns":[27],"sites.":[31],"We":[32,170,201],"observed":[33],"from":[34,112,134,178,206,275],"networks":[37,138],"that":[38,229],"there":[39],"exist":[40],"kind":[42],"of":[43,95,115,127,130,174,186,214,238,252,269],"significant":[44],"substructures":[45],"called":[46],"interacting":[47,131,175,271],"group":[49,98,118,208],"pairs,":[50,209],"which":[51,81],"exhibit":[52],"an":[53,86,236],"all-versus-all":[54],"between":[56,66],"two":[58,244,260],"protein-sets":[59],"such":[61,105],"pair.":[63],"The":[64,124,183,246],"full-interaction":[65],"pair":[68],"indicates":[69],"common":[71],"mechanism":[73],"shared":[74],"proteins":[77],"pair,":[80],"can":[82,100],"be":[83,101,233],"referred":[84],"as":[85],"type.":[88],"Motif":[89],"pairs":[90,99,129,173,205,265,273],"at":[91],"sites":[94],"used":[102],"represent":[104],"type,":[107],"with":[108,219,266,288],"each":[109],"motif":[110,121,204,264],"derived":[111,202,274],"sequences":[114],"standard":[120],"discovery":[122,126],"algorithms.":[123],"systematic":[125],"all":[128],"groups":[133,177,191],"large":[135],"computationally":[141],"challenging":[142],"problem.":[143],"By":[144],"careful":[146],"and":[147,224,304],"sophisticated":[148],"problem":[149,152,163],"transformation,":[150],"solved":[154],"using":[155],"efficient":[156],"algorithms":[157],"for":[158],"mining":[159],"frequent":[160],"patterns,":[161],"extensively":[164],"studied":[165],"data":[167],"mining.":[168],"RESULTS:":[169],"found":[171,228,278,296],"5349":[172],"yeast":[180],"dataset.":[182],"expected":[184],"value":[185],"sequence":[187],"identity":[188],"within":[189,197],"only":[193],"7.48%,":[194],"indicating":[195],"non-homology":[196],"these":[198,207,243,259],"groups.":[200],"5343":[203],"represented":[210],"form":[213],"blocks.":[215],"Comparing":[216,262,287],"our":[217,230,263],"motifs":[218],"domains":[220,255],"BLOCKS":[223],"PRINTS":[225],"databases,":[226],"blocks":[231,241,248],"could":[232],"mapped":[234,247],"average":[237],"3.08":[239],"correlated":[240],"databases.":[245,261],"occur":[249],"4221":[250],"out":[251],"total":[253],"6794":[254],"(protein":[256],"groups)":[257],"iPfam":[267],"consisting":[268],"3045":[270],"domain":[272,291],"PDB,":[276],"47":[279],"matches":[280],"occurring":[281],"105":[283],"distinct":[284],"PDB":[285],"complexes.":[286],"another":[289],"putative":[290],"database":[293],"InterDom,":[294],"203":[297],"matches.":[298],"AVAILABILITY:":[299],"http://research.i2r.a-star.edu.sg/BindingMotifPairs/resources.":[300],"SUPPLEMENTARY":[301],"INFORMATION:":[302],"http://research.i2r.a-star.edu.sg/BindingMotifPairs":[303],"Bioinformatics":[305],"online.":[306]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2012,"cited_by_count":9}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
