{"id":"https://openalex.org/W2130333286","doi":"https://doi.org/10.1093/bioinformatics/btk051","title":"LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters","display_name":"LAMARC 2.0: maximum likelihood and Bayesian estimation of population parameters","publication_year":2006,"publication_date":"2006-01-12","ids":{"openalex":"https://openalex.org/W2130333286","doi":"https://doi.org/10.1093/bioinformatics/btk051","mag":"2130333286","pmid":"https://pubmed.ncbi.nlm.nih.gov/16410317"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btk051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btk051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/768/48840138/bioinformatics_22_6_768.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/768/48840138/bioinformatics_22_6_768.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072066492","display_name":"Mary K. Kuhner","orcid":"https://orcid.org/0000-0002-6986-3870"},"institutions":[{"id":"https://openalex.org/I108865366","display_name":"Human Genome Sciences (United States)","ror":"https://ror.org/05k1yyh03","country_code":"US","type":"company","lineage":["https://openalex.org/I108865366"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mary K. Kuhner","raw_affiliation_strings":["Department of Genome Sciences 1 \u00a0 1 \u00a0 \u00a0 Box 357730 \u00a0 \u00a0 Seattle, WA 98195-7730, USA","University of Washington 1 \u00a0 1 \u00a0 \u00a0 Box 357730 \u00a0 \u00a0 Seattle, WA 98195-7730, USA","Department of Genome Sciences Box 357730 University of Washington Seattle, WA 98195-7730, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences 1 \u00a0 1 \u00a0 \u00a0 Box 357730 \u00a0 \u00a0 Seattle, WA 98195-7730, USA","institution_ids":["https://openalex.org/I108865366"]},{"raw_affiliation_string":"University of Washington 1 \u00a0 1 \u00a0 \u00a0 Box 357730 \u00a0 \u00a0 Seattle, WA 98195-7730, USA","institution_ids":["https://openalex.org/I201448701"]},{"raw_affiliation_string":"Department of Genome Sciences Box 357730 University of Washington Seattle, WA 98195-7730, USA#TAB#","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072066492"],"corresponding_institution_ids":["https://openalex.org/I108865366","https://openalex.org/I201448701"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":20.8848,"has_fulltext":false,"cited_by_count":653,"citation_normalized_percentile":{"value":0.99633416,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"22","issue":"6","first_page":"768","last_page":"770"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.2791999876499176,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.2791999876499176,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.11410000175237656,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.05939999967813492,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.7881091237068176},{"id":"https://openalex.org/keywords/markov-chain-monte-carlo","display_name":"Markov chain Monte Carlo","score":0.6856309175491333},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5806739330291748},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.5613843202590942},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5349568128585815},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.45856961607933044},{"id":"https://openalex.org/keywords/maximum-likelihood","display_name":"Maximum likelihood","score":0.4524173140525818},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.446023166179657},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.4414185583591461},{"id":"https://openalex.org/keywords/microsatellite","display_name":"Microsatellite","score":0.432875394821167},{"id":"https://openalex.org/keywords/haplotype-estimation","display_name":"Haplotype estimation","score":0.4230150282382965},{"id":"https://openalex.org/keywords/exponential-growth","display_name":"Exponential growth","score":0.4101964235305786},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3858450651168823},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3835134506225586},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3669549822807312},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27270591259002686},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.08726230263710022},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07805827260017395},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.0726918876171112}],"concepts":[{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.7881091237068176},{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.6856309175491333},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5806739330291748},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.5613843202590942},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5349568128585815},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.45856961607933044},{"id":"https://openalex.org/C49781872","wikidata":"https://www.wikidata.org/wiki/Q1045555","display_name":"Maximum likelihood","level":2,"score":0.4524173140525818},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.446023166179657},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4414185583591461},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.432875394821167},{"id":"https://openalex.org/C44432683","wikidata":"https://www.wikidata.org/wiki/Q17145705","display_name":"Haplotype estimation","level":5,"score":0.4230150282382965},{"id":"https://openalex.org/C75235859","wikidata":"https://www.wikidata.org/wiki/Q582659","display_name":"Exponential growth","level":2,"score":0.4101964235305786},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3858450651168823},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3835134506225586},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3669549822807312},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27270591259002686},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.08726230263710022},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07805827260017395},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.0726918876171112},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004252","descriptor_name":"DNA Mutational Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btk051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btk051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/768/48840138/bioinformatics_22_6_768.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16410317","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16410317","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btk051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btk051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/6/768/48840138/bioinformatics_22_6_768.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.7599999904632568}],"awards":[{"id":"https://openalex.org/G4650837874","display_name":null,"funder_award_id":"R01 GM051929","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5826160437","display_name":null,"funder_award_id":"5R01GM51929-11","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6992334247","display_name":null,"funder_award_id":"5R01CM51929-11","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1565709818","https://openalex.org/W1874454247","https://openalex.org/W1969590299","https://openalex.org/W2124061807","https://openalex.org/W2132688750","https://openalex.org/W2133571829","https://openalex.org/W2136817755","https://openalex.org/W2146442942","https://openalex.org/W2156521045","https://openalex.org/W2160517750","https://openalex.org/W6633901960"],"related_works":["https://openalex.org/W2952954362","https://openalex.org/W3093602888","https://openalex.org/W3156045358","https://openalex.org/W2921578049","https://openalex.org/W2581424563","https://openalex.org/W2020599444","https://openalex.org/W2762052495","https://openalex.org/W1495737144","https://openalex.org/W4300801083","https://openalex.org/W2949794339"],"abstract_inverted_index":{"UNLABELLED:":[0],"We":[1],"present":[2],"a":[3,39],"Markov":[4],"chain":[5],"Monte":[6],"Carlo":[7],"coalescent":[8],"genealogy":[9],"sampler,":[10],"LAMARC":[11,21,82],"2.0,":[12],"which":[13],"estimates":[14],"population":[15],"genetic":[16,19],"parameters":[17],"from":[18],"data.":[20],"can":[22,46],"co-estimate":[23],"subpopulation":[24,30],"Theta":[25],"=":[26],"4N(e)mu,":[27],"immigration":[28],"rates,":[29],"exponential":[31],"growth":[32],"rates":[33],"and":[34,53,74],"overall":[35],"recombination":[36],"rate,":[37],"or":[38,50,59,64],"user-specified":[40],"subset":[41],"of":[42],"these":[43],"parameters.":[44],"It":[45,67],"perform":[47],"either":[48],"maximum-likelihood":[49],"Bayesian":[51],"analysis,":[52],"accomodates":[54],"nucleotide":[55],"sequence,":[56],"SNP,":[57],"microsatellite":[58],"elecrophoretic":[60],"data,":[61],"with":[62],"resolved":[63],"unresolved":[65],"haplotypes.":[66],"is":[68,84],"available":[69,86],"as":[70],"portable":[71],"source":[72],"code":[73],"executables":[75],"for":[76],"all":[77],"three":[78],"major":[79],"platforms.":[80],"AVAILABILITY:":[81],"2.0":[83],"freely":[85],"at":[87],"http://evolution.gs.washington.edu/lamarc":[88]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":23},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":44},{"year":2016,"cited_by_count":35},{"year":2015,"cited_by_count":50},{"year":2014,"cited_by_count":50},{"year":2013,"cited_by_count":49},{"year":2012,"cited_by_count":65}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
