{"id":"https://openalex.org/W289983003","doi":"https://doi.org/10.1093/bioinformatics/btk020","title":"ANDY: a general, fault-tolerant tool for database searching on computer clusters","display_name":"ANDY: a general, fault-tolerant tool for database searching on computer clusters","publication_year":2006,"publication_date":"2006-01-05","ids":{"openalex":"https://openalex.org/W289983003","doi":"https://doi.org/10.1093/bioinformatics/btk020","mag":"289983003","pmid":"https://pubmed.ncbi.nlm.nih.gov/16397008"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btk020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btk020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/5/618/48839527/bioinformatics_22_5_618.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/22/5/618/48839527/bioinformatics_22_5_618.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110839239","display_name":"Andrew Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Smith","raw_affiliation_strings":["Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA","Department of Computer Science, Yale University 4 \u00a0 4 \u00a0 \u00a0 New Haven, CT 06520, USA","Department of Molecular Biophysics and Biochemistry, Yale University 3 \u00a0 3 \u00a0 \u00a0 New Haven, CT 06520, USA","Department of Plant and Microbial Biology 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","University of California 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","Department of Plant and Microbial Biology 461A Koshland Hall University of California Berkeley, CA 94720-3102, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Department of Computer Science, Yale University 4 \u00a0 4 \u00a0 \u00a0 New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Molecular Biophysics and Biochemistry, Yale University 3 \u00a0 3 \u00a0 \u00a0 New Haven, CT 06520, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Plant and Microbial Biology 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","institution_ids":[]},{"raw_affiliation_string":"University of California 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Department of Plant and Microbial Biology 461A Koshland Hall University of California Berkeley, CA 94720-3102, USA#TAB#","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076646445","display_name":"John\u2010Marc Chandonia","orcid":"https://orcid.org/0000-0002-5153-9079"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John-Marc Chandonia","raw_affiliation_strings":["Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA","Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046334676","display_name":"Steven E. Brenner","orcid":"https://orcid.org/0000-0001-7559-6185"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Steven E. Brenner","raw_affiliation_strings":["Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA","Department of Plant and Microbial Biology 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","University of California 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","Department of Plant and Microbial Biology 461A Koshland Hall University of California Berkeley, CA 94720-3102, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Department of Plant and Microbial Biology 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","institution_ids":[]},{"raw_affiliation_string":"University of California 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"Department of Plant and Microbial Biology 461A Koshland Hall University of California Berkeley, CA 94720-3102, USA#TAB#","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046334676"],"corresponding_institution_ids":["https://openalex.org/I148283060","https://openalex.org/I95457486"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03551302,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"5","first_page":"618","last_page":"620"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.3984000086784363,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.3984000086784363,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.14409999549388885,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10772","display_name":"Distributed systems and fault tolerance","score":0.07069999724626541,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.856033444404602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7905477285385132},{"id":"https://openalex.org/keywords/fault-tolerance","display_name":"Fault tolerance","score":0.6254387497901917},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.5383016467094421},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5307790040969849},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4761864244937897},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.475960910320282},{"id":"https://openalex.org/keywords/computer-cluster","display_name":"Computer cluster","score":0.4742752015590668},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4463808834552765},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3298366069793701},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2672443985939026}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.856033444404602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7905477285385132},{"id":"https://openalex.org/C63540848","wikidata":"https://www.wikidata.org/wiki/Q3140932","display_name":"Fault tolerance","level":2,"score":0.6254387497901917},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.5383016467094421},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5307790040969849},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4761864244937897},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.475960910320282},{"id":"https://openalex.org/C29140674","wikidata":"https://www.wikidata.org/wiki/Q206637","display_name":"Computer cluster","level":2,"score":0.4742752015590668},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4463808834552765},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3298366069793701},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2672443985939026}],"mesh":[{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003205","descriptor_name":"Computing Methodologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btk020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btk020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/5/618/48839527/bioinformatics_22_5_618.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:16397008","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/16397008","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt058975vw","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/058975vw","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:qt058975vw","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/058975vw","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Smith, Andrew; Chandonia, John-Marc; & Brenner, Steven E.(2005). ANDY: A general, fault-tolerant tool for database searching on computer clusters. Lawrence Berkeley National Laboratory. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/058975vw","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btk020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btk020","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/22/5/618/48839527/bioinformatics_22_5_618.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","id":"https://metadata.un.org/sdg/8","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G1309305423","display_name":null,"funder_award_id":"1 K22 HG00056","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G1398330795","display_name":null,"funder_award_id":"DE-AC03-?","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1643223109","display_name":null,"funder_award_id":"AC03-76SF00098","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G193590374","display_name":null,"funder_award_id":"DEAC03-76SF00098","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2185084985","display_name":null,"funder_award_id":"K22 HG000056","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6086728250","display_name":null,"funder_award_id":"R01-GM62621","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7444770027","display_name":null,"funder_award_id":"DE-AC03- 76SF00098","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G90151534","display_name":null,"funder_award_id":"1P50GM62412","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320314849","display_name":"Searle Scholars Program","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W289983003.pdf","grobid_xml":"https://content.openalex.org/works/W289983003.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2055043387","https://openalex.org/W2097209195","https://openalex.org/W2101805281","https://openalex.org/W2160206342","https://openalex.org/W4210400672","https://openalex.org/W6682993741"],"related_works":["https://openalex.org/W1557597140","https://openalex.org/W2055344796","https://openalex.org/W1995354553","https://openalex.org/W1517315309","https://openalex.org/W2101379615","https://openalex.org/W2126686473","https://openalex.org/W1996803629","https://openalex.org/W2099418792","https://openalex.org/W218139492","https://openalex.org/W2198910814","https://openalex.org/W52684641","https://openalex.org/W2065272709","https://openalex.org/W2791267404","https://openalex.org/W1484308937","https://openalex.org/W2199334254","https://openalex.org/W3097585167","https://openalex.org/W778819620","https://openalex.org/W996344602","https://openalex.org/W1498733934","https://openalex.org/W2087319719"],"abstract_inverted_index":{"SUMMARY:":[0],"ANDY":[1,35,60,70,121],"(seArch":[2],"coordination":[3],"aND":[4],"analYsis)":[5],"is":[6,36,61,71,122],"a":[7,31,80,87,97,137],"set":[8],"of":[9,25,30,59,64,141],"Perl":[10],"programs":[11],"and":[12,20,47,113,116,125,136],"modules":[13],"for":[14,106,111],"distributing":[15],"large":[16],"biological":[17],"database":[18],"searches,":[19],"in":[21],"general":[22],"any":[23,92],"sequence":[24],"commands,":[26],"across":[27],"the":[28,62,142],"nodes":[29],"Linux":[32],"computer":[33],"cluster.":[34],"compatible":[37],"with":[38,91],"several":[39],"commonly":[40],"used":[41],"distributed":[42],"resource":[43],"management":[44],"(DRM)":[45],"systems,":[46],"it":[48,84],"can":[49,126],"be":[50,127],"easily":[51],"extended":[52],"to":[53],"new":[54],"DRMs.":[55],"A":[56],"distinctive":[57],"feature":[58],"choice":[63],"either":[65],"dedicated":[66,81],"or":[67],"fair-use":[68],"operation:":[69],"almost":[72],"as":[73,75],"efficient":[74],"single-purpose":[76],"tools":[77],"that":[78],"require":[79],"cluster,":[82],"but":[83],"runs":[85],"on":[86],"general-purpose":[88],"cluster":[89],"along":[90],"other":[93],"jobs":[94],"scheduled":[95],"by":[96],"DRM.":[98],"Other":[99],"features":[100],"include":[101],"communication":[102],"through":[103],"named":[104],"pipes":[105],"performance,":[107],"flexible":[108],"customizable":[109],"routines":[110],"error-checking":[112],"summarizing":[114],"results,":[115],"multiple":[117],"fault-tolerance":[118],"mechanisms.":[119],"AVAILABILITY:":[120],"freely":[123],"available":[124],"obtained":[128],"from":[129],"http://compbio.berkeley.edu/proj/andy.":[130,147],"SUPPLEMENTARY":[131],"INFORMATION:":[132],"Supplemental":[133],"data,":[134],"figures,":[135],"more":[138],"detailed":[139],"overview":[140],"software":[143],"are":[144],"found":[145],"at":[146]},"counts_by_year":[],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}